Photorhabdus luminescens: CE143_12405
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Entry
CE143_12405 CDS
T08000
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
plui
Photorhabdus luminescens
Brite
KEGG Orthology (KO) [BR:
plui00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plui03032
]
CE143_12405 (topA)
03400 DNA repair and recombination proteins [BR:
plui03400
]
CE143_12405 (topA)
Enzymes [BR:
plui01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CE143_12405 (topA)
DNA replication proteins [BR:
plui03032
]
Prokaryotic type
DNA Topoisomerases
CE143_12405 (topA)
DNA repair and recombination proteins [BR:
plui03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CE143_12405 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
UJD75672
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Position
complement(2832406..2835006)
Genome browser
AA seq
866 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSASQKSSSSSTDKSKKKVK
KDEKAALVNRMGVDPYRGWEANYQILPGKEKVVAELKSLAEKVDHVYLATDLDREGEAIA
WHLREVIGGDGDRFSRVVFNEITKNAIKQAFDNPGELNIHRINAQQARRFMDRVVGYMVS
PLLWKKVARGLSAGRVQSVAVRLVVEREREIKAFVPVEYWQLHADLLAKGEISLHMEVTH
QQGKPFKPVNSEQTQAAVSLLEKARYKVLDREDRPTSSKPGAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGYITYMRTDSTNLSQDALDMVRGYIGDNFGDKYLPKTANTYSSKEN
SQEAHEAIRPSSVDIMAEQLKDMDADAQKLYQLIWRQFVACQMTPAKYDSTTLTVQAGDF
ELRAKGRTLRFDGWTKVMPVLRKGDEDRTLPVVEIGTELDLQQLLPSQHFTKPPARYSEA
SLVKELEKRSIGRPSTYASIISTIQERGYVRVESRRFYSEKMGEIVTDRLEENFNELMSY
DFTARMEDQLDQVASNKAEWKGVLDEFFTDFSEQLDVANKEPEEGGMRPNPMVITSIECP
TCQRSMGIRTATTGVFLGCSGYALSPKERCKQTINLIPENEILNILEGDEAETNALRARR
RCKKCGTAMDSYLIDNQRKLHVCGNNPACDSYEVEEGEFRIKGYDGPVIECDKCGAEMHL
KMGRFGKYMGCTDETCKNTRKILRSGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELARFKERLPEKLRYLADAPAADAEGNKTVIRFSRKTKQQYV
SSEKNGKATGWSVFYVDGKWVEKDKK
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctcttgtaatagtggagtccccggcaaaggccaaaacaatcaacaaatat
ttggggagtgactacgtggtgaaatccagcgttggtcatatccgtgatttgccgaccagt
ggctcagccagccaaaagagttcgagctcatctaccgataagtctaagaagaaggttaaa
aaagatgagaaagctgcattagtcaaccgtatgggggttgatccataccgtggttgggaa
gcgaattatcagattttgccgggcaaagagaaggtcgtggcagagctaaaatcgctggct
gaaaaagttgatcatgtttatctcgcaacggatcttgaccgcgagggagaagccattgca
tggcacttgcgggaagtgattggtggtgatggcgatcgttttagccgggttgtttttaat
gaaatcactaaaaatgccattaaacaggcatttgataatccgggtgaattaaatattcac
cggataaatgctcaacaagctcgtcgttttatggatcgagttgtgggttatatggtttct
ccgctactgtggaaaaaggtcgccagagggctatctgccggtcgggtgcaatcggtggcg
gtacgtcttgtagtagagagagaacgtgaaattaaagcgtttgtaccggtagaatattgg
caattacatgctgatttgctggcgaaaggcgaaatttcactgcatatggaagtgactcat
cagcagggtaaaccgtttaagccggttaacagtgaacaaacccaagccgccgtctcttta
ctggaaaaagcccgttacaaagtgcttgatcgtgaagatcgtccgacatccagtaaacca
ggtgcgccgtttatcacttctacattgcaacaggcagcgagcacgcgtttagggtttggc
gttaaaaagaccatgatgatggctcagcgtttgtatgaggccggatatattacttatatg
cgtactgattcaactaacctgagtcaggatgcgctggatatggttcgtggttatatcggt
gataattttggcgataaatacctgccaaaaaccgccaatacttacagtagtaaagagaat
tcacaggaagcgcatgaagcgattcgtccttccagtgttgatatcatggcagaacaactg
aaagatatggatgcggatgcacagaagctgtatcagctaatctggcgtcagtttgtggcc
tgtcagatgacaccggcgaaatacgattccacaacattgactgtacaggcgggtgatttt
gaattgcgtgccaaaggccgtacattgcgttttgatggctggacaaaagtgatgcctgta
ttgcgcaaaggtgacgaagaccgcacgttgccggttgttgaaattggtacagaacttgat
ttgcaacaactgctcccaagccaacactttactaagccaccggcacgttatagtgaggca
tctctggttaaagagctggagaaacgcagtattggtcgcccatccacttatgcttccatt
atctccacaattcaggagcgtggttatgttcgcgtagagagtcgccgtttctactcagaa
aaaatgggagagattgtgactgatcgtctggaagagaatttcaacgagctgatgagttat
gattttactgcgcgaatggaagatcagcttgatcaggttgcaagtaacaaagctgaatgg
aaaggggttttggatgaatttttcactgattttagtgaacagctagacgtcgccaataaa
gaaccggaagagggtggtatgcggcccaatccgatggttattacctctattgaatgcccg
acatgtcagcgttctatgggcattcgaacggcaactactggcgttttcctgggttgttct
ggctacgcgttgtcacctaaagagcgttgtaagcagacgataaaccttatccctgagaat
gaaattcttaatatcttggaaggggatgaggcggaaacaaacgcgttgcgagctcgtcgt
cgctgtaaaaaatgtggtacggcgatggacagctacctcattgataaccaacgtaaatta
catgtttgcggtaataaccctgcttgtgatagttatgaagtggaagagggcgaatttcgc
attaagggatatgacggtcctgttatcgaatgtgataaatgcggcgctgaaatgcacctg
aaaatgggtcgtttcggtaagtacatgggctgtactgatgaaacttgtaaaaatactcgt
aagatcttgcgtagtggggaagttgcgccgccaaaagaggacccggttccattaccagag
cttccttgtgaaaaatctgatgcctattttgtattgcgcgatggtgccgctggcgtattt
ttagcggcaaatactttccctaaatctagagaaactagagcgccgttggtggaagagcta
gcgcgttttaaagagcgtctgccggagaaattacgttacttggctgatgctcctgcggca
gatgccgaaggcaataaaacagttatccgttttagccgtaaaactaaacagcaatatgtt
tcttcggagaaaaatggcaaggcaacgggttggagtgtgttttatgttgatggaaaatgg
gttgagaaagataaaaagtaa
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