Photorhabdus luminescens: CE143_23090
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Entry
CE143_23090 CDS
T08000
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
plui
Photorhabdus luminescens
Pathway
plui03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plui00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CE143_23090 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plui03019
]
CE143_23090 (rnr)
03016 Transfer RNA biogenesis [BR:
plui03016
]
CE143_23090 (rnr)
Enzymes [BR:
plui01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CE143_23090 (rnr)
Messenger RNA biogenesis [BR:
plui03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CE143_23090 (rnr)
Transfer RNA biogenesis [BR:
plui03016
]
Prokaryotic type
tRNA degradation factors
CE143_23090 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
Rho_RNA_bind
Hrs_helical
Motif
Other DBs
NCBI-ProteinID:
UJD77586
LinkDB
All DBs
Position
complement(5355555..5357999)
Genome browser
AA seq
814 aa
AA seq
DB search
MSQDPFLGREAEKYESPIPSREYILDIIAKHTVPVSRQELAQELNLINDEDIEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDFYLSAEQLKMAIH
GDVVLAQPLPQNRKGRNEARIVRVLEPKTSQIVGRYFLDSGMGFVVPDDSRLSFDILIPK
DESGGARMGNVVVVELITRPARRTKAVGKIVEVLGEKMGTNMAVEIALRTHEIPHNWPPQ
VENQIASLDEQVPESAKKGRVDLRALPLVTIDGEDARDFDDAVYCERKRSGGWRLWVAIA
DVSYYVRPQTALDTEARNRSNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
AQGRLSSYKFYEAVMNSHARLTYTKVWRMLQGDEELREHYRPLVQHIEHLHELYQALENA
REQRGAISFESEEAKFIFNAERRIERIEPIVRNDAHKLIEECMILANIAAARFVEKNGEP
VLYRIHDRPKEESIVNLRSVFGELGLTLPGGMQPTPKDYAQLMHQVAERPDHELLQTLLL
RSMKQAIYDPENRGHFGLSLNSYAHFTSPIRRYPDLVLHRAIKYLLAKQQGIVEQGGTLT
GGWHSDVEQMLQLGQHCSMTERRADEATRDVADWLKCDFMQDQVGNTFTGIITSVTGFGF
FVRLNDLFIDGLVHVSTLSNDYYHFDNVGQRLVGEYSGKTFRLGDEVEIRVEAVHMDERN
IDFKLLSTARKARNVGKTARDKAKKVELGRESSNKKGRGYRKETHFEPDGSAVRKKRSAD
KPKGEKKKGKTLSAKTQKIAAKFKAKRAKKSADK
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccttttttgggacgcgaagcagaaaaatacgaatcacccattccaagc
cgcgagtacatcttagacattatcgctaaacatactgtaccggtaagtcgccaggaactg
gcgcaagaactgaatctgattaacgatgaagatattgaagcgttacgtcgtcgtttacga
gctatggaacgggatggtcaactggttttcactcgtcgccaatgctatgccttgccggaa
agattagatttattgaaaggtacggttattgggcatagagatggttatggttttctgcga
gtagaaggccgcaaagatgatttttatctctctgctgagcaattaaaaatggctattcat
ggtgatgttgtgctggcgcaaccattgcctcagaatcgcaaagggcgtaatgaagcgcgt
atcgttcgtgtattggagcctaagaccagccagattgtcggccgctattttcttgactct
ggtatgggatttgtcgtgccggatgatagtcgtttgagctttgatatcctgatcccgaag
gatgaaagcggtggtgctcgcatgggaaatgtggtggtggtcgagttgattacacgcccg
gcgcgccgcacaaaagctgtcggtaaaatagttgaagtgttgggtgaaaagatgggaacg
aatatggcagtagaaattgccctgcgtactcatgaaattccccacaattggccgccacag
gtggaaaaccagattgcttctttggatgaacaggtaccagaatcggcgaaaaaaggccgt
gttgatctgcgtgctttgccgttggtgacaatcgatggtgaagatgcccgtgattttgat
gatgccgtttattgtgaaaggaagcgaagtggtggttggcgtttatgggttgctattgct
gatgtcagttattatgtgcgcccgcaaaccgcattagataccgaagcacgtaaccggagt
aactcggtttacttcccatctcaggttgtccccatgttgccggaggtgctttctaatggc
ctttgttccctgaatccacaggttgatcgcctttgtatggtgtgtgagatgacggtttca
gcgcaggggcgattatcatcttataaattttacgaagccgtcatgaattctcacgcccgt
ctgacatataccaaagtatggcgtatgttgcagggcgatgaagagctgcgtgagcactac
aggccactggttcagcatattgagcatttacatgagttgtatcaggcattggaaaatgcc
cgagagcaacgtggcgcaatctcgtttgagtcagaagaggcgaaatttatctttaatgct
gaacgtcgtatcgagcgaattgaaccaattgttcgcaatgatgctcataagctgattgaa
gagtgcatgattctggcgaatattgctgcggcgcgtttcgtggaaaaaaatggcgagcca
gtgctttaccgtattcatgatcggccaaaagaagagagcattgttaacttacgctcggtt
ttcggcgaattaggattgacgttgcctggtggcatgcaaccaacaccaaaggattatgcg
caactgatgcatcaagtggctgaacgcccggatcatgagctattgcaaaccttattattg
cgttcaatgaaacaggcaatttatgatccggaaaaccggggtcacttcggtctgtcatta
aattcttatgcgcattttacctcacctatccgccgttacccggatctggtattgcatcgg
gcgattaaatatctgctggcgaaacagcaaggcattgttgagcaaggtggaacactgacc
ggggggtggcacagcgatgtggaacagatgctgcaactgggtcaacactgctctatgaca
gagcgccgcgcagatgaagcgacgagagacgttgccgattggcttaagtgtgattttatg
caagatcaggtgggcaatacttttactgggattattaccagtgtgacaggttttggtttc
tttgttcgcttgaatgatctgtttattgacggcttggtgcatgtttccacattgagtaat
gattattatcatttcgataatgttggccagcgtttagtgggtgaatactcgggtaaaact
ttccggttaggggatgaagttgaaattcgtgtggaagcggttcatatggatgaacgtaat
attgactttaagctgctttctaccgccagaaaagcccggaatgtaggcaaaacagcacgc
gataaagcgaaaaaagtagaacttggtcgcgaaagcagtaataaaaaagggcgtggttac
cgtaaagagacccactttgagcctgatggcagcgctgttcgtaaaaagcgatcggcggat
aagcctaaaggggaaaagaaaaagggtaagacgctttctgccaagactcagaaaattgcc
gctaaattcaaagctaaacgggctaagaaaagcgcagataaataa
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