Photorhabdus luminescens: CE143_24865
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Entry
CE143_24865 CDS
T08000
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
plui
Photorhabdus luminescens
Pathway
plui03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
plui00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CE143_24865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plui03400
]
CE143_24865
Enzymes [BR:
plui01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CE143_24865
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CE143_24865
DNA repair and recombination proteins [BR:
plui03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CE143_24865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Zn_ribbon_IS1595
DUF4905
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
UJD77895
LinkDB
All DBs
Position
complement(5696570..5697379)
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AA seq
269 aa
AA seq
DB search
MPELPEVETSRRGIEPHLVGNVIQYAVVRNGRLRWPVAEEIMKLSDQLVLSIQRRAKYLL
IELANGWIIVHLGMSGSLRILPEERPAEKHDHVDLVMADGKVLRYTDPRRFGAWLWSDDL
ERCSVLAHLGPEPLSNDFNGSYLYTRSNKKKTLIKPWLMDNKLVVGVGNIYANEALFTAH
IQPDRPAQTLTEREANLLAETIKKVLQRSIEQGGTTLRDFLQSDGKPGYFAQELFVYGRA
GEPCRICGEKIESIKLGQRSTFFCRHCQY
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgccagaactaccagaagtagaaaccagccggagaggaatagagccacatctggtaggg
aatgtgatccagtatgcggtagtcaggaatggtcggttacgttggccggtggcggaagaa
attatgaaattgagtgaccagcttgtgcttagcattcaacgccgtgccaaatatttgctg
attgaactggcaaatggttggattattgtccatttgggaatgtcgggcagtttgcgtatc
ttgccagaggagcgccctgcggagaaacacgatcatgtggatttagtgatggcagatggt
aaggttttgcgttataccgatcccagacgatttggggcgtggttatggagcgatgatctt
gaacggtgctcggtattggctcatttggggccggagccactttctaatgattttaacggc
tcttatctttacacccggtcaaataagaaaaaaaccttgattaagccctggctaatggat
aacaaactggttgttggagtcggtaatatctatgcaaatgaggcgttgtttactgcccat
attcagcctgatcgtcccgcgcagactttaactgagcgtgaagccaacttactggcggaa
acgattaagaaagttctacaacgatctattgagcagggtggtacgacactcagagatttc
ctgcaatctgatggtaaaccgggctattttgctcaggaattgtttgtttatggtagagca
ggagagccatgccgaatttgtggtgaaaaaatagagagtattaagcttgggcagcgcagt
actttcttttgccgtcactgtcagtattag
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