Pseudomonas luteola: FOB45_09110
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Entry
FOB45_09110 CDS
T06601
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
plul
Pseudomonas luteola
Pathway
plul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOB45_09110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plul03019
]
FOB45_09110
Enzymes [BR:
plul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FOB45_09110
Messenger RNA biogenesis [BR:
plul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FOB45_09110
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QEU27943
LinkDB
All DBs
Position
1:complement(456241..458178)
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AA seq
645 aa
AA seq
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MSFTSLGLSEALSRAVNDAGYVNPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL
ERLFPNGQPDGKKAGPRQARVLVLTPTRELAAQVHDSFKIYARDLPMRSTCIFGGVGMKP
QVTALSKGLDVLVACPGRLLDLAGQNNVDLSAIEILVLDEADRMLDMGFIHDVKKVLALL
PKERQNLLFSATFSKDITDLADKLLRNPERIQVTPPNTTVERIEQRVFRIAAAQKRALLA
HLITLGAWEQVLVFTRTKHGANRLAEYLNKNGLPAAPIHGNKSQNARTKALADFKDNSIR
VLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVSPDEEKLL
RAIERLTKQNIPDGDMQGFDPASAPVEKVEAREPREPRRQARQPRAPRKEQPARAAEGEV
SAEHAAPQQEERQARQPRRGRQQNQGQDQARAGRNKPRQERSGERQPQQTTQSPQNRDPE
EFLDDDFDNFGNRVDYVSPYQGKNRRNGGPRRPGQGQPPRTHSQGAATSGATAQARPPRP
RQGAANASNAPATDSRGPAQNKRRNKPAGQRPRQENRPYQPREPREPRPAMTEERAPSKP
QPRILHKPSRADRMLTPEQLDSLQVRPKAEKPALLTRNRSADADA
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgtccttcacttccctcggtctctccgaggccctatcccgcgcagtaaacgacgcgggt
tatgtcaacccgactcccgttcaacaacgggccattcccgctgtactgcaaggccgtgac
ctgatggttgccgcccagaccggtactggcaagacgggtggattcgccctccccgttctc
gaacggctctttccgaacggacaacctgacggcaaaaaagccggtccgcgccaagcccgt
gtgttggtattgacgcctacccgggagctggccgcccaagtgcatgatagtttcaagatc
tatgcacgcgaccttcccatgcgtagcacctgcatctttggtggtgttggcatgaagccc
caggtcactgcgctctccaagggccttgacgtcttggtagcgtgccctggtcgtcttctg
gaccttgccggtcagaataacgtcgatctgtcagccatcgagattctcgtgctggacgaa
gctgaccgcatgctcgacatgggcttcattcacgacgtgaagaaggttctcgccctgctt
cccaaagaacggcagaacctgctgttttcggcaacgttctccaaagacattaccgatttg
gccgacaagctcctgcgtaatcccgagcgcatccaggtcacgccgccaaacaccacggtc
gaacgtatcgagcagcgtgtcttccgtattgccgctgcccagaaacgcgccttgctggct
catctgattactcttggcgcctgggaacaagtgctggtcttcacacggaccaagcacggt
gccaaccgcctggccgaatacctgaacaagaacggccttccggctgcgcctatccatgga
aacaagagccagaacgcacgtaccaaagcgctggccgatttcaaggacaattccattcgc
gtgctcgtagcaaccgatattgccgctcgcggtctggacatcgaccagcttccccatgtc
gtcaacttcgagttgccgaacgtggaggaagattacgtacaccgcatcggccgtacaggt
cgtgccggtcgtagcggcgaagccatatcccttgtgtctcccgacgaggagaaactgctg
cgcgccatcgagcgcctgaccaagcagaacatccctgacggtgacatgcagggctttgac
cctgccagcgcaccggttgagaaagtagaagcgcgtgagccacgcgagccccgtcgccag
gcacgacagccacgtgcaccccgcaaagagcagcctgcaagagcagcggaaggtgaagtt
tctgctgaacacgcagcaccacagcaggaggagcggcaggcacgccagccacgtcgtggc
cgccagcagaaccagggtcaggaccaggcacgcgccggtagaaacaagccacgccaggag
cgcagcggcgagcgccagccccagcagacaactcagagcccccagaaccgcgatccggaa
gaatttctggatgacgatttcgataactttggtaaccgggtcgattatgtcagcccttat
caaggcaagaatcgccgtaatggtggtccgcgtcgtccaggtcaagggcaaccgccgcgt
acccatagccaaggcgcagcgacttcaggcgctacggctcaagcacgcccgccccgtcct
agacaaggtgcggccaatgccagcaacgcgcctgcaaccgatagtcgtggcccagctcag
aacaagcgtcgcaacaagccggccggacaacgtccccgtcaggagaatcgtccttaccag
ccacgcgaaccccgtgagccgcgtcccgctatgacagaggagcgtgcacccagcaagccg
caacctcgcattctgcacaaaccttctcgtgcagaccgcatgctgacgcctgagcagctg
gattcgctccaggttcgtccaaaggctgaaaagcctgccttgctgacacgtaatcgctcg
gctgacgctgacgcttga
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