Pseudomonas luteola: FOB45_19650
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Entry
FOB45_19650 CDS
T06601
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
plul
Pseudomonas luteola
Pathway
plul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOB45_19650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plul03019
]
FOB45_19650
Enzymes [BR:
plul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FOB45_19650
Messenger RNA biogenesis [BR:
plul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FOB45_19650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QEU31352
LinkDB
All DBs
Position
1:complement(2652487..2653803)
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AA seq
438 aa
AA seq
DB search
MTFAELGLIEPLLRVLDALEHTTPTPIQAQAIPAVLKGRDLLAAAQTGTGKTAGFALPTL
QRLVQEGPAVTANRVRALILVPTRELAEQVHTSVRDYAQHLPLRTAVVYGGVSINPQMMK
LRKGVDVLVATPGRLLDLFNQNAVRFDQVQTLILDEADRMLDLGFSRELGEIFVMVPQRR
QTLLFSATFSEAIRDLAKPLLRDPLTIDISPRNTTTKSVKQWLIPVDKKRKAELFCHLYA
QKRWGQVLVFAKTRKGVDQLVETLTQEGIRAESIHGDKPQPARLRALARFKAGEADVLVA
TDVAARGLDIQDLPLVVNLDLPIVAEDYVHRIGRTGRAGATGAAVSLVAADEVDHLAAIE
TLIGQTIARRDEPDFIPDHKVPQTGPGGVVMKKPKKPKKPKVGSVSDAKSGKPLGRWIEN
DKPSVKPVRKMPGFGKKK
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgacttttgccgaactcggcctgatcgagcctttgttgcgtgtgctcgacgcgctggaa
cacaccactccgactccgatccaggctcaggccattcctgcggtactcaaaggccgcgat
ctgcttgccgcggcccagacgggtacaggcaagacagctggctttgctttgccgacactg
cagcgcctcgttcaggagggcccggcagtcacggcgaatcgagtccgtgcattgattctt
gtgccaacccgcgaactcgccgagcaggttcacaccagcgtacgtgattacgcgcagcat
ttaccgctgcgtacggcggtggtgtatggcggcgtcagcatcaatccgcagatgatgaag
ttgcgtaaaggggtggatgtgctggtcgccacgccaggtcgtttgctggatttgttcaac
cagaacgctgtgcgctttgatcaggtacagacgctgatcctcgacgaagcggatcgaatg
ctggatctgggattttcccgcgagctgggcgagatttttgtcatggtgccccagcgtcgg
caaacacttcttttttccgccacgttctctgaagccattcgtgatctggccaagccactg
ctgcgcgatccgttaaccatcgatatcagtccgcgcaacacgaccaccaagagcgtcaag
cagtggctgattcccgtggacaaaaagcgtaaggcggaactgttctgccacctctatgcg
caaaagcgctgggggcaggtgctggtatttgccaagacccgtaagggtgtcgaccagctg
gtggaaacgctgacgcaggaaggtattcgtgccgagtcgattcatggcgacaagcctcaa
ccggctcgtctgcgtgcgctggctcggttcaaggcgggtgaagcggatgttctggtggcg
actgacgtggccgcacgaggtctggatattcaggacttgccgctcgtggtcaatctggat
ctacccatcgtggcggaagattacgttcaccgtattggacgtacagggcgtgccggtgcg
accggtgcggccgtttccctggtagctgccgatgaagtcgaccacttggcagccattgag
acgctgattggacaaaccattgcgcgacgggacgagccggacttcatccctgatcacaag
gtgccgcaaaccggccctggtggcgttgtgatgaaaaagccgaagaagccgaagaaaccc
aaggtaggctcggtgagcgacgctaaaagcgggaagcctctggggcgctggatcgagaac
gacaaaccgtcggtaaagccggttcgcaagatgcctgggttcggcaagaagaagtag
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