Pseudomonas luteola: FOB45_19720
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Entry
FOB45_19720 CDS
T06601
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
plul
Pseudomonas luteola
Brite
KEGG Orthology (KO) [BR:
plul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
plul03009
]
FOB45_19720 (rlmD)
Enzymes [BR:
plul01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FOB45_19720 (rlmD)
Ribosome biogenesis [BR:
plul03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FOB45_19720 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
Methyltransf_23
PCMT
Methyltransf_11
MTS
RrnaAD
TRM5-TYW2_MTfase
Cons_hypoth95
Methyltr_RsmB-F
Motif
Other DBs
NCBI-ProteinID:
QEU29864
LinkDB
All DBs
Position
1:complement(2667843..2669189)
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AA seq
448 aa
AA seq
DB search
MRAKGLRFQPSGGSRASSVPVGKKQRLTIEKMANDGRGIAYLEGRTWFVSGALSSETVEA
RVLSAKSQVVEARVERVLEPSGERRLPSCAMAGRCGGCTLQHIPHEAQLALKQRTLAEQL
QRFAGVTPNEWAAPLHGPELGYRRRARIAVRWDAKARRLDVGFRALASQDIVPLEACGVL
VEPLQPIARALPALLVGLEQPQAIGHVELFQGTACAMLVRVTRPLLPRDSDHLRHFCTEH
SVQLWWQAEGEPYPDEPEAALSYRLEPWNLTIAYRPGDFVQVNASVNEAMIAQALDWLAP
EPNERVLDLFCGLGNFALPLAQRVHAVVGVEGVSVMAERASENAWANGLDNAHFFQADLS
KPLIDAPWFGQSFSSVLLDPPRDGALPVVQQMKQLGAQRVLYVSCNPATLARDAGELVRQ
GYVPVRAGILDMFPQTAHVEAMVLFVAR
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgcaaaagggctgcgttttcagccgagcggcggtagccgggcctcgtcggttccg
gtcggcaagaaacagcgcctgaccattgagaagatggccaatgatggccggggtatcgcc
tatctcgaaggtcggacctggttcgtttcgggtgccttgtcatcggaaacggttgaggca
cgtgtgttgtctgccaaaagccaggtggttgaggcgcgtgtggagcgggtgcttgagcct
agtggcgaacgacgcctgccttcgtgtgccatggccggtcgttgcggtggctgcaccttg
cagcatattccgcatgaggctcaactggccctcaagcagcgtacgctggccgagcaacta
cagcgatttgccggcgtgacgcccaatgaatgggctgcgccactgcatggcccagagctg
ggctatcggcgtcgtgcacgcatcgcggtgcgctgggatgccaaggctcgccgcctggat
gttggatttcgggcgcttgccagccaggatatcgttccgctggaggcctgtggtgtgctg
gtcgagccattgcagcctatcgccagagcgctaccggctttacttgtcgggttggagcag
ccgcaagccattggtcacgtcgagctgtttcaagggacggcctgcgccatgctggtgcgt
gtcacgcgtccgctcttgccgcgtgacagcgatcatctgcgccatttctgcacggagcac
tcggttcagctctggtggcaggccgaaggtgaaccgtatcccgacgagcccgaggcagca
cttagctaccgactggagccatggaacctgacgattgcttaccgtccgggtgatttcgta
caggtcaatgcatcggttaacgaggcgatgattgcacaggcgctcgactggcttgcgccg
gagccgaatgagcgggtgctcgatctgttttgcggacttggcaatttcgccctgccattg
gcgcagcgtgtgcatgccgtggttggcgtagaaggcgtttccgtcatggcggagcgcgcg
agtgaaaatgcctgggccaatggcctggataacgcgcactttttccaggcagacctgtcg
aagccgcttatcgatgcgccatggtttggccagtccttttcatccgtattgctggacccg
ccacgtgatggcgcgttgcccgtagtgcagcagatgaagcaactgggtgcacagcgtgtg
ctctatgtgtcctgtaatcccgctacattggcacgggatgcaggcgaactggttcgtcag
gggtatgttcctgtgcgggctggaatcctggacatgttcccgcagacggcgcatgtcgag
gcgatggttttgtttgtagcgaggtag
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integrated database retrieval system
