Pseudomonas luteola: FOB45_23265
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Entry
FOB45_23265 CDS
T06601
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
plul
Pseudomonas luteola
Pathway
plul03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plul00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FOB45_23265 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plul03021
]
FOB45_23265 (rpoC)
03400 DNA repair and recombination proteins [BR:
plul03400
]
FOB45_23265 (rpoC)
Enzymes [BR:
plul01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FOB45_23265 (rpoC)
Transcription machinery [BR:
plul03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FOB45_23265 (rpoC)
DNA repair and recombination proteins [BR:
plul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FOB45_23265 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3150
Motif
Other DBs
NCBI-ProteinID:
QEU30521
LinkDB
All DBs
Position
1:complement(3430767..3434969)
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNLLKNQGQLEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIDPGMTTLEKYQLLNDEQYFEALEEFGDDFDARM
GAEAVFELLGGIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNKPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEARGMATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAVNAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINEKVKQKDGSVVSNTRIVDTTVGRALLFQVVPAGLPFDVVNQSMKKKA
ISKLINHCYRVVGLKDTVIFADQLMYTGFAYSTLSGVSIGVNDFVIPDEKARIIDAATSE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMTNLSKEKVIDREGKEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEHGLVMTPHIEGGDVVEPLGERVL
GRTIARDVFKPGADDEVIVPAGTLVDERWVEFLELNSVDEVVVRSPITCETRHGICAKCY
GRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADNVQVKNGGTIR
LHNLKHVERADGALVAVSRSGELAIADDFGRERERYRLPYGAVISVKEGDKVEPGAVVAK
WDPHTHPIVTEMDGTVAFVGMEEGITIKRQTDELTGLTNIEVLDIKDRPSSGKDIRPAVK
LIDANGRDLLLPGTDVPAQYFLPPNALVNLNDGAKVHVGDVIARIPQETSKTRDITGGLP
RVADLFEARRPKEPAILAEISGTISFGKETKGKRRLVITPTDGSEPYEELIPKWRHLNVF
EGEQVSRGEVISDGPSNPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQ
MLRKVEVSEVGDSSFIKGDQMELTQVLEENERLVAEDKFISKYERVLLGITKASLSTESF
ISAASFQETTRVLTEAAVTGKRDFLRGLKENVVVGRLIPAGTGLAYHSERKRQREIGKPQ
RVSASEAEAALTEALNSSGS
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttgctgaatctgttgaaaaaccagggtcaactcgaagagttcgatgccatt
cgtatcggtctggcctcgcccgagatgatccgttcctggtcctttggcgaagtgaagaag
cccgagaccatcaattaccgtacattcaagcctgagcgtgatggtcttttctgtgccaag
atctttggtccagtaaaggactacgagtgcctgtgcggaaagtacaagcgccttaagcac
cgtggcgttatttgtgaaaagtgtggtgtagaagttgcgctggccaaagtgcgtcgtgag
cgcatgggtcatattgagctggcgtccccagttgcacacatttggtttctgaagtcactg
ccgtcccgtatcggcctgctgctggacatgactctgcgggatatcgagcgagtgctctat
ttcgagagctacgttgtcatcgatccgggcatgaccacgcttgaaaaatatcagctgctc
aatgacgagcagtactttgaagctcttgaagagttcggtgacgattttgacgcccgcatg
ggcgccgaagcggttttcgaattgctgggcggcattgatctggagcacgaaattggccgc
ctgcgcgaagaaattccgcaaaccaattctgaaaccaagatcaagaagctatccaagcgc
ttaaagctgatggaagccttccagggctctggcaataagcctgaatggatggtcatgacg
gtgctgcccgttctgcctccagatctgcgtccgctagttccgctggatggcggccgtttt
gcaacgtctgatctaaacgacctttatcgtcgcgttatcaaccgtaataaccgactgaag
cgcctgcttgatctgtctgcgcccgatattatcgtgcgtaacgaaaagcggatgctgcag
gaggcggttgatgcactgctggataatggccgtcgcggtcgcgcaatcacgggctctaac
aagcgtccgctgaaatcgctggctgatatgatcaagggtaagcagggccgcttccgtcaa
aacctgctgggtaagcgcgtggattattcaggccgttcggttattaccgtaggtccgacc
ttgcgtctgcatcagtgcggtctgcccaagaaaatggcgttggagctattcaagccattc
atctttggcaagctggaagctcgcggtatggcgactaccatcaaggccgccaagaaaatg
gttgagcgtgagctgcctgaggtctgggacgttctcgctgaagtcattcgcgaacaccct
gtattgctgaaccgtgctccgacgttgcaccgtttgggtattcaggcgttcgagcctgtg
ctcattgaaggcaaggcgattcagttgcacccattggtgtgtgcggcttataacgctgac
ttcgatggtgaccagatggctgtccacgtgccgctgacactggaagctcagctggaagct
cgcgcattgatgatgtcgaccaacaacatcctgtcgcctgctaatggtgagccgattatc
gtgccgtcgcaggacgtggtgctgggcctttattacatgacgcgcgaggcggtgaacgcc
aagggtgaaggtcgtgtatttgctgacctgcaggaagtcgatcgcgtattccgcgctggc
gaagctgcgctgcatgccaagatcaaggttcgtatcaatgaaaaggtgaagcagaaggac
ggctctgtcgttagcaacacccgtatcgttgatacgacagtaggtcgtgccttgctattc
caggttgttcctgccggtttgccgttcgatgtcgtaaaccagtcgatgaagaaaaaggcg
atctccaaactgatcaaccattgctatcgcgtggtaggtctaaaggataccgtcattttt
gcagaccaactcatgtacaccggtttcgcctattcgaccttgtcgggcgtttccattggc
gtgaacgacttcgttattccagacgagaaggctcgtatcattgatgccgctacgtctgaa
gtaaaagagatcgaaagccagtatgcctctggtctggttactcagggtgagaagtacaac
aaggtgatcgacctttggtcgaaggctaacgacgaagtatccaaggcgatgatgaccaat
ctctcgaaggagaaggtgatcgatcgtgagggtaaggaagttgatcaggagtcatttaac
tccatgtatatgatggctgactcaggtgcgcggggctccgctgcacagattcgtcagtta
gccggtatgcgtggtttgatggccaagcctgatggctccatcatcgagacgcctattact
gcgaacttccgtgaaggtctgaacgtactccagtacttcatttccacgcacggtgcacgt
aaaggcttggcggataccgccttgaaaactgcgaactcaggttacctgactcgccgtctg
gttgacgttgcgcaagacttggttgtaaccgaagtcgactgtggtaccgagcatggcctg
gttatgacgccgcacatcgaaggtggcgacgtggtcgagccgttgggcgagcgcgtcctt
ggtcggaccattgcacgtgatgtcttcaagcccggtgcggatgacgaagtcattgttcct
gcaggcactctggtagatgagcgttgggttgagttcctcgagctgaatagcgtagacgag
gtagtggttcgctctccaattacctgtgaaacacgtcatggtatctgtgccaagtgctac
ggccgtgatctggctcgcggacatcaggttaatatcggtgaggcggttggtgttattgct
gctcagtcgatcggtgagcctggtacacagctgaccatgcgtacgttccacattggtggc
gcggccagccgtacatccgcagcggacaatgttcaggtgaagaacggcggtaccatccgt
ctgcataacctgaaacacgttgaacgcgctgacggtgcgttggttgctgtatcccgttcc
ggtgagctagctattgcggatgactttggtcgtgaacgtgagcgctatcgtctgccgtac
ggtgcagtaatctctgtcaaggaaggtgacaaggttgagccgggtgctgtggtggccaag
tgggatccgcatacccacccgatcgtaaccgagatggacggtaccgtagcctttgtcggc
atggaagaaggtatcacgatcaagcgtcagaccgatgagttgacaggtttgaccaatatc
gaagtattggatatcaaagatcgtccaagctccggtaaagacattcgtccggctgtaaag
ttgattgatgcaaatggtcgcgacttactgttgccaggtactgacgtgccggcccagtac
ttcctgccgcccaatgcattggttaacctgaacgatggtgccaaggttcatgtgggtgac
gtcattgcacgtatcccgcaggaaacatcgaagacccgagatattacgggtggtctgccg
cgtgtggctgacctgttcgaagcgcgtcgtccaaaagagccggctattcttgcggaaatc
agcggtacgatttcttttggtaaggaaacaaaaggcaagcgtcgtttggtaattacgcct
accgacggtagtgagccgtacgaggagctaattcctaagtggcgtcaccttaacgtcttt
gagggcgagcaggtgagtcgcggtgaggttatctccgatggcccaagcaatccgcatgac
atccttcggttgttaggcgtaagtgcgctggcgaaatacatcgtgaacgaaattcaggat
gtatatcgtctgcaaggcgtgaagatcaacgacaagcacattgagaccatcctgcgccag
atgctgcgcaaggtggaggtaagtgaagttggtgattcaagcttcatcaagggtgatcag
atggagctgacccaggtgctggaagaaaatgagcgcctggttgcagaagataagttcatt
tccaagtacgagcgtgtgctgctgggtatcacgaaggcatccttgtcaacggagtccttt
atttcggcagcttccttccaggagacaacgcgcgttcttactgaggcggcggtaacaggt
aagcgtgacttcctgcgtggcctgaaggagaacgttgttgtgggtcgtctgattccggcg
ggtactggtctggcttatcacagcgagcgcaagcgtcaacgggagattggcaagcctcag
cgtgtgagtgcgagcgaggcggaagctgcgctgaccgaagcgttgaactcaagtggtagc
taa
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