Photorhabdus laumondii subsp. laumondii DSPV002N: A4R40_03120
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Entry
A4R40_03120 CDS
T05478
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
plum
Photorhabdus laumondii subsp. laumondii DSPV002N
Pathway
plum03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
plum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
A4R40_03120 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plum03400
]
A4R40_03120 (recB)
Enzymes [BR:
plum01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
A4R40_03120 (recB)
DNA repair and recombination proteins [BR:
plum03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
A4R40_03120 (recB)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AWK40582
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All DBs
Position
720056..723664
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AA seq
1202 aa
AA seq
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MITEISVHRLNVLTLPLTGQRLIEASAGTGKTYTIGILYLRLLLGLGKDAAFSRPLSVEE
ILVVTFTEAATNELRGRIRENIHKLRLACIRNAIEETEPAYQQLLNEIPDKGQAAIWLLA
AERQMDEAAIYTIHGFCQRMLAHNAFESGILFEQTLIQDQHPLERQGCADFWRRHCYPLP
LSMAQVISQEWSGPEALLAELYPYLQGDMPYMVDAPASDETLLSRHEKITQLINDVKYQW
NEAAGELHDLIAGSGVDKRSYSSKHLPNWLNSVMDWAQTPTEDYQLPKALEKFRQSVLAE
KTKKGEVPEHSLFVVIDDLYQKPLTLRDLIISRAIIEVRQSIRQEKLTRGQMGFDDLLTR
LDDALKGPGSDLLAETIRRRYPVALIDEFQDTDPQQYRIFHTIYGTQPENGLLFIGDPKQ
AIYAFRGADIFTYIRARSQVSAHYTLETNWRSAYSMVQAVNKLFMRSENPFLFEQIPFIE
VSAAEKNRELSFSYDGEEQAALNFWLQQGEGVSIGDYEQTMSRLCAAQIRDWLQAGSEGR
ALLHKSEGSRPVTAADITVLVRSRKEATLIRNALNLLSIPSVFLSNRESVFDTVEAKDIL
WLLQAVLSPEKERVLRSTLASGLFGLTARQIDKLNHDEKTWDQLVDEFDGYFRLWQRRGV
LPMLRAVIANHHIAENLLASYDGERRLTDVMHIGELLQEISLQLDSEHAVTRWLAQQISH
PDPQSENQQIRLESDRHLVQICTIHKSKGLEYPLVWLPFICNFREQKRAIYHDRTSFNAC
LDIFPDDETIELAEQERLAEDLRLLYVALTRSVYHCSVGVAPLIKGNKKKAGDTDLHQCA
LGYLLQKGVKGDADFLATSLKELSGDGIVISSINETDDHPWQSQSKNDLVLSARQFKRRV
QDDWRITSYSGLRNSVVHRGNASAYFAGEESIDVIVQSIAPKLDVDASGERQLVEQPEMT
PHTFPRGASAGTFLHAILEELSFSQLPDEKWLAEQLQSAGFDERWSGTLQQWMVDIFTIP
LNDEGVQLAKIPLHHQQDEMQFYLPVEQLLRSQMLDTLIRRYDPISARCPQLEFQQVKGV
LKGFIDLVFCWQGKFYLLDYKSNWLGEESQFYTRQAMEIAMIEHRYDLQYQLYTLALHRY
LRHRLANYDYQQHFGGVIYLFLRGIDKQQPGNGIFNCRPSAEFVDALDLLFSGSEQLEKE
KN
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
gtgatcacagagatatctgtccacaggcttaatgtattaactctgccgctgactggtcag
cggctgatcgaagcatcggccgggacgggtaaaacctacaccattggcattttatatctg
cgtcttctacttggactggggaaagatgccgctttttcacggcctttaagcgtggaagaa
attctggtggtgacttttactgaggcagcaacaaatgagttacgtggtcgtatccgtgaa
aatattcataaacttcgccttgcctgtattcgaaatgcaatagaagagacagaacctgcc
tatcaacagctattgaatgaaatcccggataaagggcaggcggctatttggttactcgcc
gcagagcggcaaatggatgaagcggcgatttataccattcatggtttttgtcagagaatg
ttggcacataatgcctttgaatctgggattttgtttgaacagacattaattcaggatcaa
catccgttagaacggcaagggtgtgccgatttctggcggcgacactgttatccattgccg
ttatcaatggcgcaggtgatcagccaggagtggagtgggccggaagccctgttggctgaa
ttatacccttatttacaaggggatatgccatatatggttgatgcaccagccagcgatgaa
acgctgttaagtcgtcatgaaaaaattacccagttgatcaacgatgttaaataccaatgg
aatgaagctgcgggagagttgcacgatttaattgcgggttctggtgtcgataaaagaagt
tacagtagtaagcacttaccaaattggctgaatagtgtcatggattgggctcagacgcct
acagaggattatcagttgccaaaagcgctggagaaattccggcagtcagtattggcagaa
aagacaaaaaaaggtgaggtacctgaacattcactttttgttgtgatagatgatttatat
cagaaaccacttactttacgtgatttgattatctccagagctattattgaggttcgccaa
tcaatccgtcaggaaaaattaacacgtggtcaaatggggtttgatgatttactaacccgt
cttgatgatgctctgaaaggtcccggcagtgatttgcttgctgagacaatccgccgacgc
tatccggttgcgttgatcgacgaatttcaggataccgacccacagcaataccgaattttt
cataccatttatggcactcagcctgaaaatggattgctatttattggtgatcccaaacaa
gctatttatgcatttcgcggcgcagatattttcacttatattcgtgcccgctctcaggta
agtgctcactatactctggaaacaaactggcgctctgcctactcgatggtacaggcagta
aacaaactgtttatgcgttcagaaaatccatttttgtttgagcagattccttttattgaa
gtttctgcggcagagaaaaaccgagagctctcttttagctatgacggtgaagaacaggcc
gcactgaatttctggttacaacaaggagaaggtgtttctatcggagattatgagcaaacg
atgtcacggctctgtgctgcgcaaattcgtgattggttgcaggcaggtagtgaagggcgg
gctttgttacataaaagtgaaggttctcgacctgtgacggctgctgatattacggttttg
gtgcgtagtagaaaggaagcgacactgatccgtaatgcacttaatctgttatctatccct
tccgtatttctttctaaccgagaaagtgtatttgataccgtagaagccaaggatattctc
tggttgctgcaagcggtgttatcaccagagaaagagcgggtgttgagaagtacgcttgcc
agtggtttgtttggtttgaccgctcgacagatagacaaactaaatcatgatgagaagacg
tgggaccagttagttgatgagtttgatggctactttcgtctgtggcaacgccgtggcgtg
ttacctatgctacgagcggtaatcgccaaccatcatattgctgagaatttgcttgccagt
tatgacggtgaacggcgcttgacagatgtgatgcatattggtgagttgttgcaggagata
tctttacaacttgacagtgaacatgcggtcacccgctggttggctcagcaaatctctcat
cctgatccacaatctgaaaatcagcagatacggctagaaagcgatcgtcacttggtacaa
atttgtactatccataaatctaaggggctggaatatccgctggtatggttgccatttatc
tgtaatttcagggagcagaagcgggcgatatatcatgatcgtacaagctttaatgcttgc
ctcgatatctttcctgacgacgagacgattgagctggcggaacaagagcgattggcagag
gatttgcgtttactctatgtcgcattgacgcgttctgtttaccattgcagtgtcggcgtg
gctccgctgataaaaggcaataagaaaaaggccggggatactgatctgcatcaatgtgct
ctgggctacctgttgcaaaagggggtgaaaggggatgctgattttctggcaacatcgctt
aaagaattaagcggagatggcattgttatatcatcaattaatgagactgatgatcaccct
tggcaatcgcaaagtaaaaatgatttagtcctgtcggccaggcaatttaaacgtagagtt
caggatgattggcgtattaccagttattctggtttacgaaactctgtagttcatcgtggt
aatgcttccgcttattttgctggagaagaatctattgacgtgattgttcagtctattgcg
ccaaaacttgatgttgatgctagtggtgaaagacagttagtagaacaacctgaaatgaca
ccacatacattcccacggggagcttccgcggggacttttttacacgctattttggaagaa
cttagtttcagccaattacctgatgagaaatggttggcagaacaactgcaatcagccgga
tttgatgaacgctggagtgggacattacagcaatggatggtcgatatttttactattcca
ttgaatgatgaaggagtgcaattggcaaaaattccgctacatcatcaacaggatgaaatg
caattttatctgccggttgaacaacttttgcgatctcagatgttggatacactgatacgt
cgttatgatccaatttctgctcgctgcccccaactggaatttcagcaggtgaaaggagtg
ttgaaagggtttattgatttggtcttctgttggcaaggtaaattctacctgctggattac
aaatcaaactggttgggagaggagagtcagttttatactcgccaggcaatggaaatagcc
atgattgagcatcgttatgatctgcaatatcaactttatacactggcattgcatcgttac
ttgcgtcacaggctggctaattatgattaccaacaacatttcggcggcgtgatttatctg
tttctgaggggaatagataaacaacagccggggaatggtattttcaattgtcggccatcg
gctgaatttgttgatgctttggatctgcttttcagtggtagtgaacagcttgagaaagag
aaaaattga
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