Photorhabdus laumondii subsp. laumondii DSPV002N: A4R40_07680
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Entry
A4R40_07680 CDS
T05478
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
plum
Photorhabdus laumondii subsp. laumondii DSPV002N
Pathway
plum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4R40_07680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plum03019
]
A4R40_07680
Enzymes [BR:
plum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A4R40_07680
Messenger RNA biogenesis [BR:
plum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A4R40_07680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
UTP25_NTPase-like
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AWK41375
UniProt:
A0A6L9JL54
LinkDB
All DBs
Position
1810385..1811671
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AA seq
428 aa
AA seq
DB search
MNFKSLGLSADILRAVEEQGYSAPTPIQQQAIPVVLAGKDLLASAQTGTGKTAGFTLPML
QRLNDSPIQMKGRRPVRALILTPTRELAAQVGENVRDYSKYLRLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSRVEILVLDEADRMLDMGFIHDIRRVLNKLPPK
RQNLLFSATFSDDIKSLASKLLRDPVSVEVARRNSASEQIEQLVHFVDKKRKGELLSFLI
GSRNWQQVLVFTRTKHGANRLAEQLNKDGVTASAIHGNKSQGARTRALADFKDGRIRVLV
ATDIAARGLDIDQLPYVVNFELPNVAEDYVHRIGRTGRADATGQALSLVCVDEHKLLKDI
ERLLKREIPRMAIPGYEPDPTIKAEPIQNGRQARGDNRQKNSHRRSGAPSRQRSSSHDVS
HKSPNVRG
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcaaatcacttggcttaagtgctgatattttgcgtgccgttgaagaacagggt
tattcagcgccgacaccaatccaacaacaggcaattcctgttgtattagcaggtaaagat
ttattagcgagtgctcaaacaggcacaggtaaaaccgcaggttttaccttacccatgctg
caacggttaaatgattcccctattcagatgaaagggcgccggccagtcagagcattaatc
ctgactccaactcgtgaattggctgctcaagtgggtgaaaatgtccgcgactacagtaaa
tacctcagactgcgctctctggttgtttttggcggtgtcagtattaaccctcagatgatg
aaattgcgtgggggtgtggatattttagtcgcaacaccggggcggttactggatcttgaa
catcaaaatgcggttgatttatcccgggtagaaattttggtattggatgaagctgaccgg
atgctggatatggggtttattcatgatattcgtcgagtgctgaataaattaccaccgaaa
cggcaaaatttactgttttccgcgactttctctgacgatatcaaaagcttagccagtaag
ttattgcgtgatcccgtcagtgttgaagttgcacgtcgtaactctgcttctgaacagatt
gaacagcttgttcactttgtcgataaaaagcgtaaaggtgagctgctctctttcttgatc
ggcagccgtaactggcagcaagttctggtatttacccgaaccaaacatggcgcgaaccgt
ttggcagaacagttaaataaagatggtgtaacggcttcggctattcatggtaataaaagt
cagggggcgagaacccgtgcactggctgattttaaagatggccggatcagagtgctggta
gcgacagatattgcggcccgtggtttggacattgatcaactgccttatgtggtgaatttt
gaattgcctaatgtcgctgaagattatgtccaccgtattggtcgtactggccgagcagat
gcaacagggcaggcactttctctagtctgtgttgatgagcataagctgttgaaagatatt
gagcgtttgttaaaacgggagattccccgtatggcaattcccggttatgagccagatcca
acgatcaaggctgaacctatccaaaacggtcgtcaggcacgtggcgataatcggcagaaa
aatagccatcgccgttctggggcaccttcgcgtcagcgtagcagcagtcatgatgtatcc
cataaatcgcctaacgtcagaggttaa
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