Photorhabdus laumondii subsp. laumondii DSPV002N: A4R40_22390
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Entry
A4R40_22390 CDS
T05478
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
plum
Photorhabdus laumondii subsp. laumondii DSPV002N
Pathway
plum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4R40_22390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plum03019
]
A4R40_22390
03009 Ribosome biogenesis [BR:
plum03009
]
A4R40_22390
Enzymes [BR:
plum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A4R40_22390
Messenger RNA biogenesis [BR:
plum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A4R40_22390
Ribosome biogenesis [BR:
plum03009
]
Prokaryotic type
rRNA helicases
A4R40_22390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AWK44050
LinkDB
All DBs
Position
complement(5281390..5283309)
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AA seq
639 aa
AA seq
DB search
MTTETEISFADLGLSAPILSALEDLGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAA
FSLPLLHNINAELKAPQILVLAPTRELAVQVAEACADFSKHMRNVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMSQIPA
EHQTALFSATMPEAIRRITRRFMNDPQEVRIQASVTTRPDISQSYWSVYGMRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
VERTMKLTIPEVELPNAELLSQRRLERFAANVQQQLESSDLDQYRTLLSKLQPAEDLDIE
TLAAALLKMAQGERPLILPPDPVRRPRREFNERDDRRRNGFDDRGERSDRPRRERRDVGE
MELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFATHSTIELPKGMPGDLLSHF
TRTRILNKPMNMQLMGDAQPFERRERRGGGRNGNGNGNSSGSGPRRDRENFNGGGRRFNG
ERRGGEGRGEGQSRSNFRGRGDDHDSSAPRRRYNNSNAQ
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgaccactgagactgaaatctcttttgctgatctgggtttatcagcacctatcctttct
gcgctggaagatcttggctatgaaaagccatctccaattcagcaacaatgtattccccat
ttattaaatggccgtgacgtactgggtatggcacagacggggagtggtaaaacagcggca
ttcagtctgcctttactacataatatcaatgctgagttgaaagctccgcagatccttgtg
ttggcaccgacccgtgaactggcggtacaggtagccgaagcgtgcgcagatttttctaaa
catatgcgtaacgtgaatgttgttgcactgtatggtgggcaacgttatgacgttcagtta
cgcgctttacgtcaagggccacaaattgttgtgggtacaccagggcgtcttctggaccat
ctgaagcgtggtacgttggatctgtctaacctgagcggtttagttttggatgaagcagac
gaaatgctgcgtatgggctttatcgaagatgttgaaaacatcatgagccagattcctgct
gaacatcagactgcactgttctctgcaactatgccagaagctatccgtcgcattactcgt
cgttttatgaacgatccgcaagaagtgcgtatccaagcgagtgtaacgactcgtcctgac
atcagccagagctactggtctgtttacggtatgcgtaaaaatgaagctttggtgcgtttc
cttgaagctgaggattttgatgctgcgattatttttgtgcgtaccaaaaatgcaacgttg
gaagtagcagaagcactggagcgtaatggctacaacagtgcggcgctaaacggtgatatg
aaccaggcactgcgtgagcagacattggaacgtctgaaagatggccgtttggatattttg
attgcaactgatgttgcagcgcgtggcttggatgttgagcgcatcagtctggttgttaac
tatgacattccaatggatgcggaatcttatgttcaccgtattggccgtactggccgtgca
ggtcgtgcaggtcgtgcattgttgtttgtagaaaaccgtgaacgtcgcttgttacgtaac
gttgaacgtacaatgaagctgactatcccggaagttgaactgccaaatgctgaattattg
agtcagcgtcgtctggaaagatttgccgctaatgtacagcagcaattggaaagtagcgat
ctagatcagtaccgtactctgttgtctaaactgcaacctgcggaagatctggatatagaa
acgctggcggctgcattattgaaaatggcacagggtgagcgcccgttgattctgcctccg
gacccggttcgtcgtcctcgccgcgaattcaacgaacgtgatgatcgtcgtcgtaatggt
tttgatgatcgtggcgaacgtagtgatcgtcctcgtcgtgaacgccgtgatgttggtgaa
atggagttgtaccgtattgaagtgggccgcgatgatggtgttgaagttcgtcatatcgtt
ggtgcgattgctaatgaaggtgatatcagcagccgttatattggcaacatcaaattgttt
gcaacgcattccacgattgaattgccaaaaggcatgccaggtgatttgttatcccacttt
acccgtacccgcattctgaataagccaatgaatatgcagttaatgggtgatgcacagcca
tttgagcgccgtgaacgtcgtggtggtgggcgtaacggcaatggtaacggtaatagtagt
ggtagtggccctcgccgtgatcgtgagaatttcaatggtggtggccgtcgcttcaatggt
gaacgccgcggtggagaaggtcgtggtgaaggtcagagccgtagcaatttccgtggtcgt
ggtgatgatcatgattcatctgctccacgccgtcgttataacaatagtaacgcacagtaa
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