Photorhabdus laumondii subsp. laumondii DSPV002N: A4R40_22900
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Entry
A4R40_22900 CDS
T05478
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
plum
Photorhabdus laumondii subsp. laumondii DSPV002N
Pathway
plum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4R40_22900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plum03019
]
A4R40_22900
03400 DNA repair and recombination proteins [BR:
plum03400
]
A4R40_22900
Enzymes [BR:
plum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A4R40_22900
Messenger RNA biogenesis [BR:
plum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A4R40_22900
DNA repair and recombination proteins [BR:
plum03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A4R40_22900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AWK44137
UniProt:
A0A6L9JRP1
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Position
complement(5383256..5385082)
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AA seq
608 aa
AA seq
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MSTAEVINTISLAEQVLRKTFGYLQFRSGQQQVIDTILEGRDCLVIMPTGGGKSLCYQIP
ALVQEGVTLVVSPLISLMKDQVDQLRANGVAADCLNSTQAREQQIDVIRRCRQGMIKLLY
IAPERLMMDNFLEQLLEWQPAMLAVDEAHCISQWGHDFRPEYRALGQLRQRFPTLPVIAL
TATADETTRNDIVRLLNLNNPLIHISSFDRPNIRYTLIEKYKPLDQLWLFIRGQKGKSGI
VYCNSRSRVEEISERLQKRGLSVAPYHAGLDNSQRARVQDAFQRDDLQVVVATVAFGMGI
NKPNVRFVVHFNIPRNIESYYQETGRAGRDGLPAEAVLFYDPADMVWLRRCLEEKEVGTQ
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGESKQTPCGNCDICLDPPKNYDGLVDAQKAL
SSIYRVGQRFGIGYIVEVLRGANNQRIRDMRHDHLPVYGIGKDQSQEHWVSVLRQLIHLG
FISQNIANYSALQLTEAARPILRGEVSLKLAVPRIQNLKGRSQQSKSYSGNYDRKLFAKL
RKLRKSIADEENIPPFVVFNDVTLIEMAEQCPVTEGEMLLINGVGQRKLERFGNVFMALI
REHLEEFG
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
gtgtctaccgcagaggtcattaatacgatatcactggcagaacaggtattgcggaaaacc
tttggttacttgcaattccgttctggtcagcaacaagttatcgataccattcttgaaggg
cgtgactgtctggtcattatgccgactggtggcggtaaatcattatgttaccaaattccg
gcactggtacaggaaggggtaactttggttgtttccccgttgatctctttaatgaaagat
caggtggatcaactgcgggcaaatggcgttgcggcagattgcttgaattcaactcaggcc
cgtgaacaacagattgatgtgatccggcgttgccgtcagggcatgattaaattgctgtat
atcgcccctgagcgtttgatgatggataacttccttgagcaacttctggaatggcaacca
gccatgttggctgtggatgaagcccactgtatttcacaatggggccatgatttccggccg
gaataccgggcattggggcagctcaggcaacgctttccgacattacctgtcattgcgttg
acggccaccgctgatgaaacgactcgcaatgatattgtccgactactgaatcttaataat
ccacttatccatatcagcagttttgaccgtcccaatatccgttataccttgatagaaaaa
tacaaaccattagatcaactgtggctatttattcgcggtcagaaaggtaaaagtggcatt
gtgtactgcaacagccgcagcagagttgaagagatatcagagcgtttacaaaaacgtggc
ttgagtgttgcgccataccatgccgggttggataacagtcaacgtgcgcgggtgcaggat
gcatttcaacgtgatgatttacaggtggtggtggcaaccgtggcatttggtatgggaatt
aataaacccaatgttcggtttgtggttcattttaatattcctcgtaatatcgaatcctat
tatcaggagaccgggcgtgccgggcgtgatggtctgccggcggaagcggtgctgttttat
gatcccgcggatatggtatggcttcgccgttgtctggaagagaaagaggtgggcacacag
caggatattgagcgacataagctcaatgcaatgggggcttttgccgaagcgcaaacttgc
cgccgtctggtgttattgaactattttggtgaaagcaaacaaaccccttgcggtaactgt
gatatctgccttgatccaccaaaaaattatgatggcttggtggatgcccaaaaagcgctt
tcttctatttaccgggttgggcagcgctttggtatcggctatattgttgaagtgctcaga
ggtgcgaataatcagcgtatccgtgatatgagacatgatcatttgccggtttatggtatt
ggtaaagatcaaagtcaggaacactgggtgagtgtattgcggcagcttattcatttaggc
tttatcagtcaaaacattgccaattattctgcattacaattaacagaagcggcacgtccg
atattgcgtggtgaagtttcgctaaaactggctgttccacgaatacagaatctaaaaggg
cgtagtcagcaaagtaaatcgtatagtggtaattatgatcgcaaactatttgccaagcta
cgtaaattacggaaatctattgctgacgaagaaaatatcccgccttttgttgtatttaac
gatgtcacgctgattgaaatggcagagcaatgcccggttacggagggtgaaatgttatta
atcaacggggtagggcaacggaaacttgaacgttttggtaatgtctttatggccttaatt
cgtgaacatctagaggagtttggatag
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