Photorhabdus laumondii subsp. laumondii DSPV002N: A4R40_23140
Help
Entry
A4R40_23140 CDS
T05478
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
plum
Photorhabdus laumondii subsp. laumondii DSPV002N
Pathway
plum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4R40_23140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plum03019
]
A4R40_23140
Enzymes [BR:
plum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A4R40_23140
Messenger RNA biogenesis [BR:
plum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A4R40_23140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
AWK44176
UniProt:
A0A6L9JN50
LinkDB
All DBs
Position
5438287..5439573
Genome browser
AA seq
428 aa
AA seq
DB search
MSKTHLTEKKFSDFALHPKVIEALDNKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKT
LAFLASAFHYLLTHPAAEERQTNQPRALIMAPTRELAVQIYSDAEDLAQATGLKMGLAYG
GDGYDKQLKILESGVDILIGTTGRLIDYTKQGHINLNAVQVVVLDEADRMYDLGFIKDIR
WLFRRMPPVNERMNLLFSATLSYRVRELAFEQMNHAEYIEVEPLQKTGHRIREELFYPSN
EEKMRLLQTLLEEEWPDRCIIFANTKHRCEDIWAHLAADGHRVGLLTGDVAQKKRLRILE
EFSNGNIDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLA
CEEYALNLPAIEDYIQHSIPVSKYNSQALLKDLPAPKRRYRSRSGNHQRRNNLSHRNNTP
RNNRKRSG
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaacacacttgacagaaaagaagttttccgacttcgccttgcaccccaaggtt
atagaagctcttgataataagggcttttctaattgtacaccgatacaagcactgacattg
cctttcactgtcgaaggtcgtgatgtcgcggggcaagcgcaaaccggtacggggaagacg
ctagcatttttagcgtctgcttttcattatttactaactcatcccgcagcggaggagcgt
caaaccaatcagccaagagcgctgattatggctcctacccgcgagctcgctgtacagatt
tactctgacgcagaagatctggcacaggcaacaggtctaaagatgggtcttgcctacggc
ggtgatggttacgacaagcagctgaaaatactggaatccggagttgacatccttatcggc
actaccggacgtctaatcgactataccaaacaggggcacattaatctgaatgcggtccaa
gttgtggttcttgatgaagctgatcgcatgtacgatctcggttttatcaaagatatccgc
tggctattccgtcggatgccaccagtaaacgaacgcatgaacctactgttttctgccaca
ctctcttaccgagtccgagaactggcatttgagcaaatgaatcatgcagagtatatcgag
gtagaaccgttacagaaaacaggacaccgcatccgcgaagagctgttttatccttctaat
gaagaaaagatgcgcctgcttcaaacgttgttggaagaagagtggcctgatcgatgcatt
attttcgccaatacaaaacatcgttgtgaagatatctgggcgcatctggctgctgacgga
catcgagttgggttactaaccggtgatgtagcacaaaaaaaacggttacgcattctggaa
gaattcagcaacggcaatattgatattctggttgcaactgatgtcgcagcccgtgggttg
cacattcctttagtcactcatgtttttaattatgacttaccagacgactgcgaggattat
gttcaccgcattggccgtactggtcgtgcaggtgaaagtggtcattcgatcagcctggcc
tgtgaagaatatgcactaaacctgccagcgattgaagattatattcaacactctatcccg
gtcagcaaatataacagtcaagccttgctgaaagatttaccggcacctaaacgccgatac
cgttcgcgttcaggaaatcatcagcgccgtaacaatttgtcgcatcgtaataatacacca
cgtaataaccgtaaacgttcaggctga
DBGET
integrated database retrieval system
