Photorhabdus laumondii subsp. laumondii DSPV002N: A4R40_23355
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Entry
A4R40_23355 CDS
T05478
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
plum
Photorhabdus laumondii subsp. laumondii DSPV002N
Pathway
plum03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A4R40_23355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plum03021
]
A4R40_23355
03400 DNA repair and recombination proteins [BR:
plum03400
]
A4R40_23355
Enzymes [BR:
plum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A4R40_23355
Transcription machinery [BR:
plum03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A4R40_23355
DNA repair and recombination proteins [BR:
plum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A4R40_23355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
AWK44211
UniProt:
A0A6L9JPG9
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All DBs
Position
complement(5485287..5486276)
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AA seq
329 aa
AA seq
DB search
MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADIIHDGD
VEIVKPQHVICHLTDETASISMRIKVQRGRGYVPASARIHSEEDERPIGRLLVDACYSPV
ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP
EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIADE
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgtgacagagtttctaaaaccgcgcctggttgatatcgagcaagtcagt
tcgacgcacgccaaggtgacccttgagccattagagcgtggctttggccatactcttggt
aacgcactgcgccgtattctgctttcgtctatgccgggttgtgcggtgactgaggttgag
attgatggtgtactgcatgagtacagcaccaaagaaggtgtacaggaagatatcctggag
attctcctcaacctgaaagggctggcggtaagagttcagggaaaagatgaagttattctt
accttgaataagtctggcattggccctgtgactgcagccgacattatccacgacggagat
gtcgaaatcgtcaagccgcaacatgtaatctgccacctgactgacgaaactgcttctata
agcatgcgcattaaagttcagcgtggtcgaggttatgtgccggcttctgcccggattcat
tcggaagaagatgagcgccctattggtcgtttgttagtagacgcttgttatagcccagta
gagcgtattgcctacaatgttgaagcagcgcgtgtagaacaacgtaccgatttggacaag
ttggttatcgagatggaaactaacggtacaatcgatcctgaagaggcgattcgccgtgca
gctactattttggctgaacagctggaagcttttgttgatttacgtgatgtacgtcagcca
gaagtaaaagaggagaagccagagtttgatccgatcctgctgcgccctgttgacgatctg
gaattgactgtccgctctgctaactgtcttaaggcagaagctatccactacatcggtgat
ttggtacagcgtaccgaggttgagttgcttaagacacctaacctgggtaaaaaatctctt
acagagatcaaagacgtactggcttcacgtggcttatctctgggcatgcgcttagaaaac
tggccaccagcaagtattgctgatgaataa
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