Paenibacillus lutimineralis: EI981_04420
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Entry
EI981_04420 CDS
T06479
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
plut
Paenibacillus lutimineralis
Brite
KEGG Orthology (KO) [BR:
plut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
plut03009
]
EI981_04420 (rlmD)
Enzymes [BR:
plut01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
EI981_04420 (rlmD)
Ribosome biogenesis [BR:
plut03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
EI981_04420 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_15
MTS
PrmA
TRM5-TYW2_MTfase
Cons_hypoth95
Methyltransf_11
UPF0020
Methyltransf_32
Methyltransf_12
PCMT
Methyltransf_23
Methyltransf_24
N6_N4_Mtase
Methyltrans_SAM
OST-HTH
N6_Mtase
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
AZS18131
UniProt:
A0A3Q9IHG4
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All DBs
Position
1032692..1034146
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AA seq
484 aa
AA seq
DB search
MKKQRDRARGMKANAGKAEAIAGLPVVKNDEVIIDIIGMNHDGEGVGRAEGYTLFVAGAL
PGEQARVKVLKTKKQYGYAKLLELLQTSPQRVTAPCPIYHQCGGCQLQHLGYSGQLEWKR
QHVVDALERIGKLTVAKEDDSTAIRVLPTLGMSEPWRYRNKAQVPVGVTDGALVGGFYAR
GSHRIIDMETCLIQHENNDDVVAKVKEIARRLGISAYDEESGQGLLRHVVVKVGFKTGEM
MLVLVTNGDKIPRAQEWIEAIRHEIPAVVSICQNVNKRQTNVIFGDVTRVLWGRETIYDY
IGDVKFAISARSFYQVNPVQTEVLYGKTVEYAGLTGKETVIDAYCGIGTISLFLAQHAAK
VYGVEIVPEAIEDARRNAKLNGMDNVTFEVGASEDVIPSWKEQDIEADIIVVDPPRKGCD
PRLLETILEMKPERVVYVSCNPSTLARDLRVLEDGGYRTVEVQPVDMFPHTVHVECCSLL
VRND
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaacagcgggatcgggcaagaggtatgaaggcgaatgcaggtaaggcagaagca
atagccggattgccagttgtcaagaatgacgaggtaattatcgacatcatcgggatgaac
catgacggcgaaggtgtaggccgtgctgaaggctacaccttgttcgttgcaggagcgctc
ccgggtgaacaagcgcgggttaaggtgctgaagacgaagaagcagtacggttacgccaag
ctgcttgagctgcttcagactagtccgcagcgtgtaacagcgccttgcccgatctatcat
caatgcggcggctgccagcttcaacatttgggctattctggtcaattggagtggaaacgc
cagcatgttgtggacgcgctggagcggattgggaagctgacggtggcgaaggaagacgat
tcaactgctattagagtactgccgactttaggaatgtccgaaccgtggcgctatcgtaac
aaagcccaggtacccgttggcgtgacagatggagcgttggtcggaggattttatgctcgc
ggtagtcaccgtatcatcgacatggagacctgtctgatccagcatgagaacaatgacgat
gtagtcgctaaggtgaaggagatcgcccgtcgtcttggcatctctgcttacgatgaagaa
tccggacaaggattgcttcgtcatgttgtcgtgaaagttggcttcaagacgggggaaatg
atgctcgtcctcgtaacgaatggggacaagattccacgggcccaggaatggatcgaagca
atccgtcatgagattccggcggtcgtaagtatctgccagaacgtgaataagagacagacg
aacgttatctttggcgatgtaacccgcgtcttgtggggacgtgagacgatctacgattac
attggggacgtgaagtttgccatctcggcgcgttctttttatcaagtgaaccctgtgcaa
acagaggttctgtacgggaaaaccgtagagtatgctggactcactggcaaggaaacagta
atcgacgcatattgcggaatcggcaccatttccttgttcctggctcaacatgccgctaaa
gtgtatggtgtcgaaattgtaccagaagcgattgaggatgctcgtcgcaacgctaagctg
aacggcatggataacgtaacctttgaggtcggcgcctctgaggatgtcattccgtcctgg
aaggagcaagacatcgaagccgacatcatcgtcgtcgacccgccgcgtaaaggctgtgac
cctcgcctgctagagacgatcctcgaaatgaagccagagcgggtggtatatgtgagctgc
aacccttctacgttagcacgggatttgcgggtactagaggacggcggctatcgcactgtt
gaggtgcagccggtggatatgttcccgcatacggtgcatgtggagtgttgctcactgttg
gttaggaatgactaa
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