Paenibacillus lutimineralis: EI981_06190
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Entry
EI981_06190 CDS
T06479
Name
(GenBank) DNA polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
plut
Paenibacillus lutimineralis
Pathway
plut03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
plut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EI981_06190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plut03400
]
EI981_06190
Enzymes [BR:
plut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EI981_06190
DNA repair and recombination proteins [BR:
plut03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EI981_06190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AZS14085
UniProt:
A0A3S9UUU1
LinkDB
All DBs
Position
complement(1466666..1467559)
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AA seq
297 aa
AA seq
DB search
MARSIKGTIRIEGEEVTITNPDKLLWPEAGITKQQYLQRLAELSPYLLRYCRNRFLTTIR
YPGGIHSKFFYQKNAPEPLPDFVKTAQHEDINYIVLDNLPTLLWLGNLAAIEFHPSLHYV
GDILPCEWMIDLDPSQDDEPRIMEAAAYVGDILASLGISSVPKTSGATGVQIIIPIEYGV
TFDQLRSIGQFVARYATEKYPSFFTIERLKKDREGKIYFDYLQHYSGKTLAAPYTPRARQ
AASVSTPLTWDEVRKNPHPSEFNLLNIGERLQQRGDLLQEVKPQSLELILRHLQSKA
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atggcaagatcgatcaaaggcacgatccggattgaaggcgaggaagtgaccattacgaat
ccagacaagctgctctggccggaagccggcattaccaagcagcaatatttacagcggctg
gccgagttgtccccttatttgctccgctattgccgcaatcggttcttaactacaatcaga
tatccaggcggcatccatagcaaatttttctatcagaaaaatgctcccgagccactgccg
gatttcgtcaaaaccgctcagcatgaggatatcaactatattgtgctcgacaatctgcca
actctactctggctcggcaatttggcagcgatcgaattccatccttcattgcattatgtc
ggggacatcctgccttgcgaatggatgatcgatctcgatccaagtcaggatgatgagccg
cggattatggaggctgccgcttacgttggcgacattcttgcctctcttggcatctcttcc
gttcccaagacgtcgggtgctactggcgttcagattattattccaattgaatacggcgtt
acgtttgatcaactacgctctatcggccaattcgtagcccgctacgctacggagaagtat
ccttctttcttcaccatcgaacgtctgaagaaggatcgcgagggcaaaatttattttgat
tatctccagcattacagcggaaaaaccttggcagctccctacaccccacgcgcacggcaa
gctgccagcgtatcaacgccattaacctgggatgaggtacgcaagaacccccatccatct
gaattcaatctgctgaacatcggtgaaagactgcagcaaagaggagatttgttgcaagag
gtgaagccgcaatcgctagagctgatcttacgacatttacaatccaaggcttag
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integrated database retrieval system
