Paenibacillus larvae: ERIC2_c03040
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Entry
ERIC2_c03040 CDS
T02963
Symbol
yjcD
Name
(GenBank) putative ATP-dependent DNA helicase YjcD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
plv
Paenibacillus larvae
Pathway
plv03420
Nucleotide excision repair
plv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ERIC2_c03040 (yjcD)
03430 Mismatch repair
ERIC2_c03040 (yjcD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plv03400
]
ERIC2_c03040 (yjcD)
Enzymes [BR:
plv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ERIC2_c03040 (yjcD)
DNA repair and recombination proteins [BR:
plv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ERIC2_c03040 (yjcD)
MMR (mismatch excision repair)
Other MMR factors
ERIC2_c03040 (yjcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
YdjO
AAA_30
AAA_12
AAA_11
Zf_2nd_IFT121
Hid1
Motif
Other DBs
NCBI-ProteinID:
AHD04165
UniProt:
V9W3G0
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All DBs
Position
complement(313958..316735)
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AA seq
925 aa
AA seq
DB search
MNCLNKEFVITAMNNHKLFTTKPFGAGALPMPVAPAGSVLTSKHLVSPNEPDAAFFRMIE
KAGISLNETQIQAVRHDRGPLLTLAGAGTGKTSVLTCRAAYLLKVRQVDPRQILLVTFTS
KAAAEMRERLADLPGISAVEAKLVGARTFHSLFLQVIRQEGCEDDLLTDQRRPHFIMKRL
LKIAGLQEAWEPETALSRLSAWKSSMLSPEEWPARTSMEQQLKPVLLQYEGWKKAEGKMD
FDDILLEAHKLFTRHPEVLERIRRQYAYIMVDEFQDTNPLQYQLVRMIAEPDCNLMAVGD
DDQTIYTFNGARQAYILQFEQQYPAARVITLDVNYRSGSSILGLANEVISHNEERRPKTL
YTGIREKGTVQYLSPLTTDHEAEAILEHIKQQVGKGKRKYGDIAILHRTASYSRAFFERL
LMEDIPFVQYGNSDLFYRHWLIRPVLNHLRLALNSRDMKACEGVLLTLYIAKEKGASWIR
EKEKKKAKKWPLIHLMDHPDLKENQKEKLMERLKMIKSLQAFKPEEAIRQIRIKFYDAFI
DAYDPEPDTQYKETLKEMLDELETSARRFTGLEEFLGFVDRITDKYMVMESLKKEDESDA
LKLMTIHRSKGLEFPVVYLIGVSERVLPHSTSLKKEGCKDNRFEGEHGAAAALEEERRLA
YVAVTRAKEELYISSPGYYRGKQAHVSRFILQPFESRRSRVSNTAQPVPASAAKKPSAIQ
DRSIPEMGNASDKKTVRTQVYTAGYGTNSSQPERKARHDQPKLVSPAASVTSLSVYTHTV
TKSLDRQPVSAVDSYLKPAPAAAPSFSISSIEKKERPENKPKLTKEEKADRAARMLAAKI
ESGQKSASPSRPAMPAKPAASSSTPSVAAAKPASKMVPAWVCTDKTCKSWVKMEERETVD
RNASKDCPLCKSPMRKGIRSVQVRG
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgaactgtttgaataaggagtttgtaattactgctatgaataatcataaattgtttaca
acaaaaccgttcggagctggagcccttcctatgcccgtggctcccgccggttcggttctg
acaagtaagcaccttgtttcacctaatgaaccggatgccgcattttttagaatgatagag
aaagcagggatatctctcaacgaaacgcagattcaggctgttcgacatgatagggggcct
ctgcttacattagccggagccggaaccggcaaaacttcggtattaacctgccgggcagct
tatctgctcaaggttcggcaagtcgatccccggcaaattctgcttgttactttcacttct
aaagcggcggcagaaatgcgggaacggctggcagacctgcccggaatttccgcagttgag
gccaaactggtaggggccagaacgtttcactctctattccttcaggttataaggcaggaa
gggtgtgaagatgacctgctgacagatcagcggagaccgcacttcatcatgaagcgtctt
ctgaaaatcgccgggttacaggaagcatgggaaccagagactgcactatcccggttatcc
gcatggaaatcctctatgctttctccggaagaatggcctgcccgaacttccatggaacag
cagctgaaaccggtattgcttcagtatgaaggctggaagaaggcggaaggcaaaatggat
tttgatgatattttgcttgaagcccacaagctctttacccgccaccctgaagtattagaa
cgaattcgccgccaatatgcttatatcatggtggatgaatttcaggacaccaaccctctc
caataccagctggtccggatgattgccgaacccgactgcaatctgatggcagttggagac
gatgatcagactatctatacttttaacggtgcacggcaagcctatatcttgcagtttgaa
caacaatatcccgctgcccgtgtgatcactttggatgtgaattaccgttcaggctcctcc
attctgggattagccaatgaggtcatttcccataatgaagaacgaaggcctaaaactctt
tacaccggaatacgggaaaaaggaactgtacaatatctgtctccgctgaccaccgatcat
gaggcagaggcaatactggaacatataaagcagcaggtcgggaaaggcaaacgaaaatat
ggagatatcgcgattttgcaccgtacggccagctacagccgtgctttcttcgagcggttg
ttgatggaagacattcccttcgtccagtatggaaactcagatttgttttaccgccattgg
ctgataaggcctgttctgaatcatcttcgacttgcccttaattctagagacatgaaagcg
tgcgaaggtgtactgctcactttatatatcgcaaaggaaaaaggcgcttcctggatcaga
gaaaaagaaaagaaaaaagctaaaaaatggccactcatacacctgatggatcatcctgac
ctgaaagagaatcaaaaggaaaaacttatggaacggctaaaaatgatcaaatcactccag
gcctttaagccggaagaggccattcgccaaatcaggatcaaattctacgacgcctttata
gacgcctatgatccggaacccgatacccagtacaaggaaacgttaaaagaaatgctggat
gaactggaaacatccgcgagacgctttaccgggctcgaagaattcctgggttttgtagac
aggattacagataaatacatggtgatggaatccttaaaaaaagaagatgaatctgatgca
ttaaaacttatgaccattcatcgttccaaggggctggaatttccagtagtctacctgatc
ggtgtttcagagagagtacttccgcacagcacctccttaaaaaaggaaggctgtaaagac
aaccggtttgagggagaacatggagcggcggctgcccttgaagaagaaagacggctggct
tatgtggcggtaaccagagccaaagaagaactttatatcagttctcccggatattaccgc
ggaaagcaggcacacgtaagccggttcatcctgcagccttttgaatcccgcagatcaagg
gtttccaatacggcgcagcctgtccctgcttcagctgcaaaaaaaccgtccgccatacag
gatcgttctattcctgaaatggggaatgcatcagacaaaaagacggtacggacacaggtt
tataccgcaggttacggtacaaattccagccagccggaaaggaaggcccgtcacgatcag
ccaaaattagtctcaccggctgcatccgtaacttccctgtccgtgtatacgcatactgtt
accaaaagcttggatcgacagcctgtttctgccgttgattcatatttgaagccggcaccg
gcagccgccccttctttcagcatcagctcaattgagaaaaaagaaaggccggagaataaa
cccaagctgaccaaggaagaaaaggcggatcgagcagcacgaatgcttgctgccaagata
gaatccggacagaaatctgcctctccaagccgtcccgccatgccggccaaacccgctgca
tcgtcgtccacaccttcggtagcagcagcgaaacctgcatctaaaatggtaccggcctgg
gtatgtaccgataagacctgcaaatcttgggtaaaaatggaagaaagggagacggttgac
cgtaacgcatccaaagactgcccgctgtgcaaatctcccatgagaaagggaataaggtct
gtccaagtacggggctga
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