Paenibacillus larvae: ERIC2_c21070
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Entry
ERIC2_c21070 CDS
T02963
Symbol
rnjA
Name
(GenBank) ribonuclease J 1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
plv
Paenibacillus larvae
Pathway
plv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ERIC2_c21070 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plv03019
]
ERIC2_c21070 (rnjA)
Messenger RNA biogenesis [BR:
plv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ERIC2_c21070 (rnjA)
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AHD05899
UniProt:
V9W7K6
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All DBs
Position
complement(2128348..2130024)
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AA seq
558 aa
AA seq
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MSKKNNEKLTIFALGGVGEIGKNMYVVQYDNDIVVIDSGLKFPEEDMLGIDIVIPDISYL
LENKDKVRGILITHGHEDHIGGLPYVLKHLNVPVYGTKLTLGLIETKLKEAGLLGETKRI
LINADSEIKMGTMTATFFKTNHSIPDSVGVCLETPEGNVVHTGDFKFDQTPVNDQYADLH
RMAEIGKKGVLALLSDSTNAERPGYTGSEKSVGITIEEVFRKARQRVVLATFASNIHRVQ
QVIDAAYATNRKLTVIGRSMVNVVTIASELGYLRVPDGILIEPEEVNRLAADRVVILCTG
SQGEPMSALTRMARSTHRKVDILPGDTVVIAATPIPGNERYVGRTVDELFRLGAHVIYGP
GSVTGVHVSGHGSQEELKLMLNLMKPKYFIPIHGEYRMLRLHGQLAESVGMDKEDIFIID
NGDTVEIQNGVARKAGKVQAGNILIDGLGVGDVGNIVLRDRKLLSQDGILVVVVTLSKQE
GTILSGPDIISRGFVYVRESEGLLDEANRIVTNTLNKLMNDNVNEWASLKTHVKDALGRF
LYEQTRRRPMILPIIMEV
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
ttgtctaaaaagaataatgaaaaattgacgatctttgcccttggcggcgtgggagagatc
ggtaaaaatatgtatgtggtgcaatatgacaatgatattgtagtcattgatagcggtttg
aaatttccggaagaggatatgctcggtatcgacattgtgattccagacatctcttatttg
cttgaaaataaggataaagttcgtggaatcctgattactcacggacatgaggaccatatc
ggaggacttccatacgtattgaagcacttgaatgttccggtgtacggaaccaagctgact
cttgggcttattgaaaccaagctcaaggaagctggccttttgggagaaactaagcgcatt
cttattaatgcggactccgagatcaagatgggaaccatgacggcgaccttctttaaaacc
aatcacagtatcccggattccgtaggagtttgtttggaaaccccggaaggtaacgtggtt
catactggagacttcaagtttgaccagacaccggtgaatgaccaatatgctgatctccac
cgcatggccgaaatcgggaagaaaggtgtacttgccttgctttccgatagtacgaacgcg
gaacgccctggctatacaggatcggaaaaaagtgttggtatcacaattgaagaagttttt
cgcaaagctcggcaaagggtcgttttggctacttttgcctcaaatatccaccgggttcag
caggttattgatgcagcgtatgcaaccaatcggaagctgactgtcatcggcagaagcatg
gttaacgttgtgacaattgcctcggagcttggttatcttagagtacctgacggcatactg
atcgaacctgaagaggtgaatcgattagcagctgatcgtgtagttattctctgtacgggc
agccagggagaaccgatgtcggctctaacccgcatggcccgttcaactcatcgcaaagtg
gatattctgcctggagatacggttgtaattgctgcaactccgattccggggaacgagcgt
tatgtaggacgtacagtggacgaactgttccgcctgggggctcatgtgatttatggcccg
ggatctgtgacgggagtccatgtttccggacatggcagccaggaagaattgaaactgatg
ttgaacctaatgaaacctaagtactttattcccatccatggggaatatcggatgttaagg
ctgcatggacagttggccgaatccgtaggtatggacaaagaagatattttcatcatagac
aacggagacacagtcgaaatccaaaatggagttgcccgcaaagccggtaaagtacaggcg
gggaacatcttgattgatggtttaggtgtaggtgatgtaggaaatatcgtactccgcgac
cgcaaattactgtctcaggatggcattttggttgtggtggttaccctgagcaagcaggaa
ggtactattttgtccgggccggatattatttcacgtggttttgtatatgtccgcgaatct
gaagggttgcttgatgaggctaaccgaattgtaacaaacacactgaataaattgatgaac
gataatgtaaatgaatgggcatctttaaaaactcatgtaaaagatgctctgggacgattt
ttatatgagcaaaccagaagaagaccaatgatccttccaatcatcatggaggtctaa
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