Paenibacillus larvae: ERIC2_c39730
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Entry
ERIC2_c39730 CDS
T02963
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
plv
Paenibacillus larvae
Pathway
plv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ERIC2_c39730 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plv03400
]
ERIC2_c39730 (mfd)
Enzymes [BR:
plv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ERIC2_c39730 (mfd)
DNA repair and recombination proteins [BR:
plv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ERIC2_c39730 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
RecG_dom3_C
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AHD07638
UniProt:
V9WBR9
LinkDB
All DBs
Position
complement(3885465..3888986)
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AA seq
1173 aa
AA seq
DB search
MQALIKAFSTDTDFQSIVSGIRSDMKEQLVAGLTGSSRQVMIASLMQELQRPLLVITHNM
FSAQKITEDLVECLPENQVLLYPAQELLAAEVAVASPETLAQRIDVLTRLAAGFRGVLVT
PYASLRRLLPPKEMFAAAAMEVKLGDVLDINAFLTRLPELGYERVERVESKGEISVRGGI
IDVYPLTAEAALRIELFDDEVDSIRTFDVESQRSIDKQSAIMIPPCREIVADSKRFQRAS
QQAYELLQAQLEKMSDRTAKDKLLENIGYEIEQLREEQTFNGMFKYISLFYPESHTLFDY
MPQDGILLLDEPARLIETAKQLEREEADWFTHSLQEGRALPDLSLSKTYESLLHRPAFPV
LYLSLFLRQVPQTQPQNIVNFMCRVMQNFHGQMNVLKSEMERWKKTGARVVLLANGEERM
ERVRHVLEDYHIPEPEILNGNLQTGFEMPSIRLVVITEGEMFTQKQRKVRKADKKIENAE
RIKSYQELKVGDYVVHVNHGIGKYVGIGTLEINGIHKDYLHILYAGGDKLSVPIDQIDLI
QKYVGSEEKEPKIYKLGGAEWARVKNKVRSSVKDIADDLIKLYAERQSTLGYAFSKDSTY
QHEFEAMFPYDETHDQLRAIEEIKKDMEKPLPMDRLLCGDVGYGKTEVAIRAAFKAAIDG
KQVAVLVPTTILAQQHYETFRERFADFPFNIQVMSRFRSKKEQNETIKSIKAGTVDIVIG
THRLLSQDVKFKELGLLIVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRTLHMSMLG
VRDLSVIETPPENRFPVQTYVLEHTPTLVREAIERELAREGQVYYLFNRVQGITQIADQI
SMLVPDARVSVAHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDAD
KMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMRD
LAIRGAGNLLGAEQHGFIASVGFDLYSQMLSEEINKRKQEMEGEETQPVAEWNTQIDLHV
DAYLPSDFIYDSMQKIEIYKKVANVRTLDEVEDLHEELVDRFGDLPPAVVNLLAVARFKI
YGAAYKIESISQKGEDFSIKVSPDQNGQLDGQRLFELSTQFDGRIKLVAGPQIHIMVRCK
GMGNEESIALVEKFLVQYKEALKTKGELQNATK
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
ttgcaagctttaatcaaggctttttctacggatactgattttcagagcattgtttcgggc
atccgttcggatatgaaagagcagctcgttgccggtcttaccggctcctctcgacaggtg
atgatcgcatccctgatgcaggaactgcaacgtcctctgctggtaattacacacaatatg
ttttctgcccaaaaaataaccgaagacttggttgaatgccttccagaaaatcaggtgctg
ttgtatccggctcaggaattgctcgccgccgaagtggccgtggccagtcctgaaacgctg
gctcagcgcattgatgttctgacccggcttgccgcaggattccggggtgttctcgtgaca
ccatatgccagcctgagaaggcttctgcctcctaaagaaatgtttgcagcagccgccatg
gaagtcaaactgggggatgtcctggacataaacgctttcctgacccggctcccggagctt
ggttatgaacgtgtggagcgtgtggagtccaagggagagataagtgtccggggtggtatc
atagatgtgtatcccctgactgcagaagcagccctgcgaatcgagctgtttgatgatgag
gtagattctatccggacgtttgatgtagagagtcagcgctctatagataaacaatcagct
attatgattccgccgtgcagggaaattgtggccgatagtaagcggtttcagcgcgcctct
cagcaagcttatgaacttttgcaggcacagctcgaaaaaatgagtgacaggacggctaag
gataaactgcttgagaatatagggtacgaaattgaacaactccgggaagagcagacgttt
aacggaatgtttaaatatatttcattattctatccggaatcccatacattgtttgattat
atgccgcaagacgggatacttcttctggatgaaccggcgcgtttgattgaaacagccaaa
caattggaacgggaggaagcggactggtttacccactctcttcaggagggacgggcgctt
cctgatttgtcgttgtctaagacatatgaaagcctgctgcaccgccctgcttttcctgtg
ctgtacctttccttatttttacgccaggttccgcaaacccagccgcagaacatcgttaat
tttatgtgcagggtgatgcaaaacttccacggccaaatgaatgtcctcaaatcggaaatg
gaacgatggaagaagacgggggccagagtggttttactggctaacggggaagagagaatg
gaaagagtccgccatgtactcgaggactaccacattccggaaccggaaattttgaacggt
aacctgcaaaccggattcgagatgccttccattcgtcttgtggtcataactgaaggcgag
atgtttacgcagaaacagagaaaagtccggaaggcagataaaaagatagagaatgcggaa
aggattaaaagttaccaggagcttaaagtcggtgattatgtcgttcatgtgaaccatgga
atcggaaaatatgtagggatcggtacccttgaaatcaatgggatacacaaagactacctt
catattttatatgccggcggggataagctttccgtaccgatcgaccagatcgatctaatc
caaaaatatgtgggttcggaagaaaaagagccgaagatctataagcttggcggagcagag
tgggcccgtgttaaaaataaagttcgttcttccgttaaggatattgccgatgatttgata
aaactgtatgcggaaaggcagtctacacttggttatgcttttagcaaggacagcacatat
cagcatgaatttgaagcaatgttcccttacgatgagacccatgatcagctgagggccatt
gaagaaattaagaaggacatggaaaaaccgctgccaatggaccgtcttctatgtggcgat
gtgggttacggtaaaacggaggtggctatccgtgcggcctttaaagcggctatagacggt
aaacaagtggctgtcctggtacccacaaccattctggcccagcagcattatgaaaccttc
cgggaaaggtttgccgacttcccgtttaacattcaggtcatgagccgtttccgttccaag
aaagaacaaaatgagacaataaaaagtattaaagcaggaacggtagatatcgtgattggt
acgcaccgcctgctttcccaggatgtaaaatttaaagagctgggacttctgattgtggat
gaggagcagcgttttggcgtgtcccataaggaaaagctcaaaaggcttaaaacaaatgtg
gacgtgcttaccttgacagctactccgatcccaaggacgcttcatatgtccatgcttgga
gtacgcgatctttccgttatagaaacgccgccggaaaaccgttttccggttcaaacctat
gtgcttgagcacacacctactctggtaagggaagctattgaacgtgaactggcgcgtgag
ggccaagtctattacctttttaaccgtgtgcaggggataacccagatagcagatcagatt
tcgatgctggttccggatgcccgggtctctgtggcacacgggcaaatgagtgaacaggaa
ctggagaaaaccatcctggacttcctggatggggaatatgatgtgcttgtcagcacaagt
attattgaaaccggtgttgatattccgaatgtgaacacattaattgtccacgatgccgat
aaaatgggcttgtcccagctttaccagctgaggggccgggtgggccgttccaaccggatt
gcgtatgcttattttacgtatcaaagggataaggtactgacggaagttgcggagaaaagg
ctgcaatcgataaaagagtttacagaacttggatcagggtttaaaattgccatgagagac
ttggccatccgcggtgccggcaatttgcttggtgccgagcagcatgggtttatagcttct
gtaggatttgatctttactcgcaaatgctctctgaagagattaataaacgcaagcaggaa
atggaaggagaagaaacccaacctgttgcggaatggaatactcagattgatctgcatgta
gatgcctatctgccttcggatttcatttatgacagtatgcaaaagatcgaaatttacaaa
aaagtcgctaatgttcgtacattagatgaagtggaagacctccatgaagaactggtggac
cggtttggtgatttgcctcctgcggtagtaaacctattggctgtagcccgtttcaaaatc
tacggggccgcctataagattgaaagcatcagccaaaaaggggaagacttctcaattaaa
gtatcaccggaccaaaatggacaactggacggacaaaggctttttgagctatccacgcaa
tttgacgggcggatcaagcttgtagccggaccgcagattcatattatggttcgctgtaaa
ggaatgggaaatgaggagtcgatcgcattggtagagaagtttctggtacaatacaaagag
gctttgaaaacgaagggagaattgcaaaatgcaacaaaataa
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