Paenibacillus lautus: D5F53_01105
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Entry
D5F53_01105 CDS
T05701
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
plw
Paenibacillus lautus
Pathway
plw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D5F53_01105 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plw03021
]
D5F53_01105 (rpoC)
03400 DNA repair and recombination proteins [BR:
plw03400
]
D5F53_01105 (rpoC)
Enzymes [BR:
plw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D5F53_01105 (rpoC)
Transcription machinery [BR:
plw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D5F53_01105 (rpoC)
DNA repair and recombination proteins [BR:
plw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D5F53_01105 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AYB41976
UniProt:
A0A385TE79
LinkDB
All DBs
Position
245899..249513
Genome browser
AA seq
1204 aa
AA seq
DB search
MLDVNNFEYMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ
DIDIEKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNNPEWMIMDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKK
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGHAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLASGNIL
NPKDGKPVVTPSQDMVLGSFYLTMDNKEEKGTGMILGSVNEAVSAYQREAAGLHARVAIP
VKALGKTSFTDKQQDAILITTIGRIIFNEIFPASFPYINEATRTNLLQGTPEKYFVYEKG
ADIQKVIQELPVSGAVGKEYLGSIIARCFETYHTTETSVILDKIKQIGFTYSTRAGVTVA
VSDVIVPDEKNEILKESDEKVKVVTNQYRRGLITNEERYDRVIDIWSKTKDDITDVLMKS
MDRFNSIMLMVDSKARGNKSQITQLGGMRGLMANPSGRIIELPIKSNFREGLTVLEYFLS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDECSTDKGFMVSRIQDGKEVIEDL
YDRIEGRYAFETVRHPETKEIIVNRNELIDSDKAEEIVAAGVEQLQIRSILSCRARYGVC
KKCYGRNLATGKHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGVVKEIRETKDRREIEVQGEAETKVYAVTYGSRLRVSEGKHIEA
GDELTDGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHVEVMIRQMLRKFRI
VDAGDTNLLPGSFVDMHEYETANKDAILSGKEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMNRYRSVKFEGQDDVNDESQELET
ASID
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
ttgttggacgttaacaattttgagtacatgaaaatcggtcttgcttcaccggaaaaaatc
cgttcttggtctcgcggagaggtgaagaagccggaaacgattaactaccgtacattgaag
ccggagaaagaaggcctcttctgcgagcgtattttcggtcctcagaaggactgggaatgt
cattgcggtaagtataagcgtgtccgttataaaggagtagtctgcgatcgctgcggcgtt
gaagtcacgcgcgccaaagtccgtcgtgaacggatgggccatatcgagctcgcagctcct
gtatcgcacatttggtatttcaaaggcattccaagccgcatgggtctggctctggatatg
tccccaagatctcttgaggagatcatttacttcgcatcttatgttgtaaccgatccagga
gatacgccgctggagaagaagcaattgctgtccgagaaggaataccgcagctaccgtgag
aagtacggctacggcttccaagccggcatgggtgctgaagcggtcaagaaacttcttcaa
gacattgatattgagaaagaacttgaattccttaaggaagaactgcgcactgcccaaggt
cagcgccgcaaccgggcgatcaaacgcctggaagtgattgaggcgttccgcaactccggc
aacaatccggaatggatgatcatggatgtactgccggtcattccgccggagcttcgtccg
atggttcaacttgatggcggacgctttgcgacttccgacttgaacgatctgtaccgtcgc
gttattaaccggaacaatcgtctgaaaagactgttggatctcggcgcgccggatatcatt
gttcaaaacgagaagcgcatgctgcaggaagctgtcgatgcattgatcgacaacggccgc
cgcggccgtccggtaacaggtccgggtaaccgtccgcttaaatccctcagccacatgctg
aagggtaaacaaggacgtttccgtcagaacttgctcggtaaacgggttgactattccggt
cgttccgttatcgttgtaggtccttacctgaaaatgtaccaatgcggtctgcctaagaaa
atggcgcttgagctcttcaagccgttcgttatgaaagaactggtcaacaagggcctggca
cataatatcaagagtgcgaaacgcaaagtagaacgtgtaagtccagaggtatgggatgtg
ctcgaggaagtcattaaagagcatccggttcttctgaaccgtgcaccgacgcttcacaga
ctcggtattcaagcatttgaaccgattctggttgagggccatgcgatccgtctccacccg
ctcgtatgtacggcgtataacgctgactttgacggtgaccaaatggcggttcacgttcct
ttgtccgctgaggctcaagccgaagcgcgtctgttgatgctggcatcgggcaacattttg
aacccgaaagacggtaagccggttgttacgccgtctcaggatatggtactgggttccttc
tatctgaccatggataacaaggaagagaaaggtaccggcatgattctgggtagcgtgaac
gaagcggtttccgcttatcagcgtgaagcagctggcctgcatgcacgcgtagcgattccg
gttaaagcccttggcaaaaccagcttcacagacaaacagcaggatgcgattttgattacg
acgatcggacggattatctttaacgagattttccctgccagcttcccatacatcaatgaa
gcgactcgtacgaacctgctgcaaggcacgcctgagaagtatttcgtatacgagaagggt
gcagatattcagaaggtgattcaggaactcccggtcagcggagccgttggcaaggaatac
ctgggttccatcattgcacgctgtttcgaaacgtaccatacaacggaaacctctgtgatt
ttggataaaatcaagcagatcggtttcacatactctacccgtgcaggcgtaaccgttgcg
gtatccgacgttatcgtacctgacgagaagaacgaaattctgaaagagtccgacgagaag
gttaaagtggtaacgaaccagtatcgccgcggcttgattacgaacgaagaacgttatgac
cgcgttatcgacatctggtccaagaccaaagacgatattaccgatgtgctcatgaagtcg
atggatcgctttaactccatcatgctcatggtggattccaaagcgcggggtaacaaatcg
cagatcacccagctcggtggcatgcggggtctgatggcgaacccgtcgggccgtatcatc
gaactcccgatcaaatcgaacttccgtgaaggactgacggtactcgagtacttcttgtcc
acgcacggtgcgcgtaaaggtcttgccgatacggcgcttcgtaccgctgactccggttac
ttgactcgtcgacttgtcgacgtggcccaggatgtcatcgttcgcgaagacgagtgcagc
acggataaaggctttatggttagccgtattcaggacggcaaggaagtcatcgaggatctc
tatgaccgtatcgagggacgttacgcatttgaaaccgttcgtcatccggaaaccaaagag
atcatcgtaaatcgcaacgaattgatcgactccgacaaagctgaagagatcgtagcggct
ggtgtagagcagcttcaaattcgttccatcttgagctgccgtgcacgttacggcgtctgc
aaaaaatgttacggtcgtaacctggcaaccggcaagcatgttgagattggtgaagcggtt
ggtattatcgcagcccaatccatcggcgaaccgggaacacagctcacgatgcgtacgttc
catacaggcggcgttgccggtgacgatattacacaaggtcttccgcgtatccaggagctc
tttgaagcccgtaatcctaaaggtcaagcgaccattagtgagatcgacggcgtggttaaa
gagatccgcgaaacgaaggaccgccgtgaaatcgaagtgcaaggtgaagctgagactaag
gtttacgcggttacctacggctcccgtctgcgcgtaagcgaaggcaagcacattgaagcc
ggggatgaactgaccgatggttccatcgatccgaaggaaatgcttcgcatcaaagggatc
cgtggcgtgcagaactacatccttcaggaagttcaacgcgtataccgtaaccaaggcgta
gaaattaacgataaacacgttgaagttatgatcagacagatgctgcgtaaattccgtatc
gtggatgcgggagatacgaacctgctgccaggctccttcgtggatatgcatgaatacgag
acggctaataaagacgctattctctccgggaaagaaccagcggttgccaaaccggttctc
ctcgggattacgaaggcatctctcgaaaccgattcgttcttgtcagcagcctccttccag
gagacgactcgcgtgttgactgacgctgccatcaaaggcaaagtcgatcagctgcttggt
ctgaaagagaatgttatcattggtaaactgatccctgcaggtaccggtatgaaccgttat
cgcagcgtgaagttcgagggacaggacgatgtgaatgacgaaagtcaggaactcgaaaca
gcttctatagattaa
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integrated database retrieval system
