Paenibacillus lautus: D5F53_03400
Help
Entry
D5F53_03400 CDS
T05701
Name
(GenBank) DNA polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
plw
Paenibacillus lautus
Pathway
plw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
plw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
D5F53_03400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plw03400
]
D5F53_03400
Enzymes [BR:
plw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
D5F53_03400
DNA repair and recombination proteins [BR:
plw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
D5F53_03400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AYB42383
UniProt:
A0A385TFJ4
LinkDB
All DBs
Position
complement(691564..692481)
Genome browser
AA seq
305 aa
AA seq
DB search
MARTVKGTLTIEGQEIQITNPDKPLWPEVGITKAMYLQKLAAISPFLLRYCRGRLLTTIR
YPHGAEGESFYQKNAPEPLPPFVQTYVHENINYVLLNGLPELLWLGNLAALEFHPSLHLA
GSHLPCEWMIDLDPTLPEEPRIMEATAIVGDVLSSLGLSSVPKTSGATGVQIIVPIPEGI
TFDELRTVGQFVGQYVTEKFPRLFTIERLKKNRGDKIYFDYLQHYSGRTLAAPYTPRARR
LGTVSTPLTWDEVRQDVSPTEFHLLNIEERLREKGDLLQTLPPQPIENVIRHLKPKGKTE
SKRKG
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtaccgttaaaggcaccctgacaatcgaggggcaagagattcaaattacgaat
cccgacaaaccgctgtggccggaggtcggcattaccaaggcaatgtatttgcaaaagctt
gcggccatctccccgttcttgctccggtactgccggggcaggctgctcacaaccatccgg
tatccgcacggagccgaaggcgaatccttctatcagaaaaacgcgccggagccgctgccg
ccttttgttcagacctatgtgcacgaaaatattaactatgtgctgctcaacgggctgccg
gagctgctctggctgggaaatctggctgcgcttgagtttcacccttccctgcatctggca
ggcagccatctgccctgcgaatggatgatcgatttggatcccacgctcccggaggagcca
cggattatggaggcgacggccatcgtaggggacgtgctgagctccctgggcctgtcctcc
gtcccgaaaacctcgggagcgaccggggtacagatcatcgttccgattccggaaggcata
acgttcgatgaacttcgaacggtcggccaattcgtgggccaatacgtgacggagaagttc
ccgaggctgttcaccatcgagcggctgaagaagaaccgcggcgataaaatctacttcgat
tatcttcagcactacagcgggaggacgctcgccgctccttataccccgcgggcccgacgg
cttgggaccgtctccacgccgctcacctgggacgaagtccgccaggacgtttctcccacg
gagtttcacctgctgaacatcgaagaacggctgagggagaagggcgacctgctgcagacc
ctgccgccccaaccgatcgagaatgtcattcggcatctgaagccaaaggggaagactgag
tcaaaaaggaaaggatag
DBGET
integrated database retrieval system