Paenibacillus lautus: D5F53_07165
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Entry
D5F53_07165 CDS
T05701
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
plw
Paenibacillus lautus
Pathway
plw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D5F53_07165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plw03019
]
D5F53_07165
03009 Ribosome biogenesis [BR:
plw03009
]
D5F53_07165
Enzymes [BR:
plw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D5F53_07165
Messenger RNA biogenesis [BR:
plw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D5F53_07165
Ribosome biogenesis [BR:
plw03009
]
Prokaryotic type
rRNA helicases
D5F53_07165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_30
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AYB43078
UniProt:
A0A385TJB6
LinkDB
All DBs
Position
1522951..1524552
Genome browser
AA seq
533 aa
AA seq
DB search
MKNFADFGLEPRVLQAITELGFEEATPIQSQSIPIALTGKDMIGQAQTGTGKTAAFGLPL
IHKIAKEEERIVALVMTPTRELAIQVAEEIGKLSRFKGIRSLAIYGGQDIGRQIRALKRK
PQIIIGTPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMDDIQSILKLVPEERQTLL
FSATMPPNIQKLASQFLNEPEHVSVIPKHVSAPLIDQAYIEVPERQKFEALSRLLDMESP
ELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLYFIERVTR
HRIPRKPLPTIAEAIEGKQRIIAERVLEIIEQGELTEYKGLAIQLLEQYDSVQLLAAAMK
ILTGDKKEASDIHLTPEDPIRAKRRKPDIRNGRKPSGGYGGRGNSGGYRRDGGSGGGGNR
GGYSKGGYNRDGGGGYNRDRDGGGYNRDRSNSGDRKPRSYSGGERRPNRSGDE
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaattttgcagattttggcttggagccgcgcgtgctgcaagcaatcactgagctt
ggcttcgaggaagccacaccgattcaatcccaatcgattccgattgctcttaccggaaaa
gacatgattggacaagcacagactggtacaggtaagacagcagcattcggcctacctctt
atccacaaaatcgccaaagaagaagagcgtatcgtcgctctcgttatgaccccaacccgc
gaacttgccattcaggttgcagaagaaatcggcaagctgtcccgtttcaaaggaatccgt
tccttggccatttacggcggacaggatatcgggcgtcaaatccgcgctttgaaaagaaag
cctcagattattatcggtacgccgggtcgattacttgaccacatcaacagaaaaaccatc
cgtcttgacgacgtacaaaccgttgtactggacgaagcggatgaaatgctggacatgggc
ttcatggacgacatccagtcgatcctcaagctggttccagaagaacgtcaaaccttgctg
ttctccgcaactatgccgcctaacattcagaagctggcatcccagttcctgaacgaacct
gagcatgtatctgttattcctaagcacgtaagtgctccactgatcgaccaagcatatatc
gaagttcctgaacgtcaaaaattcgaagccttgagccgccttctggatatggagtcgcct
gagcttgcgattgtcttcggacgtaccaagcgccgtgtcgacgaattggcagaagccctg
caaaaacgcggatattcggcagatggcctccatggcgacctgtcccagcaccaacgtgat
accgtcatgcgtaaattccgcgacggcagcatcgatgttctcgtggcaacagacgtggca
gcgcgcggtctcgacgtatccggcgttacccatgtcgtaaactttgacttgccgcaagat
ccggaaagctatgtacaccgtattggtcgtacgggccgtgcgggcaaggaaggtacagcc
tggtccttcgtcacgccgcgtgaaatggatcatctgtatttcatcgagcgtgtgacgcgt
caccgtattccacgcaagccgctgccaacgattgccgaagcgatcgaaggtaaacagcgc
atcatcgctgagcgcgtgcttgaaattattgagcaaggggaattgaccgagtacaaaggc
cttgccattcaattgctggagcagtacgattccgtacaattgcttgcagctgcaatgaaa
atcctgacaggcgacaagaaggaagcatccgatattcaccttacgcctgaggatccgatc
cgcgccaaacgccggaagccggatatccgcaatggccgcaagcctagcggcggttatggc
ggacgcggcaacagcggcggatatcgccgtgacggcggaagcggcggcggcggcaaccgc
ggcggctactccaaaggcggatacaaccgtgacggcggtggtggttacaaccgcgatcgc
gatggcggtggctacaaccgtgaccgcagcaacagcggtgaccgcaaaccgcgttcctac
agcggcggcgagcgtcgtcctaaccggagcggagacgaataa
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