KEGG   Paenibacillus lautus: D5F53_17880
Entry
D5F53_17880       CDS       T05701                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
plw  Paenibacillus lautus
Pathway
plw02024  Quorum sensing
plw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:plw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    D5F53_17880
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    D5F53_17880
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:plw03019]
    D5F53_17880
   03036 Chromosome and associated proteins [BR:plw03036]
    D5F53_17880
Messenger RNA biogenesis [BR:plw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     D5F53_17880
Chromosome and associated proteins [BR:plw03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    D5F53_17880
SSDB
Motif
Pfam: Hfq LSM Hfq_1 DUF150_C
Other DBs
NCBI-ProteinID: AYB45032
UniProt: A0A2A5LR75
LinkDB
Position
complement(3914828..3915067)
AA seq 79 aa
MNKSINIQDTFLNQLRKENIPATVYLTNGFQIRGTIKAFDNFTIVIDSDGRQQMVYKHAI
STFMPQRNVSLMQDNNSEQ
NT seq 240 nt   +upstreamnt  +downstreamnt
atgaacaagtccataaacatccaagacacgttcttgaaccaactgcgcaaagagaacatt
ccggccacggtataccttacaaacggctttcagatccgtggaacgatcaaagcttttgac
aattttaccatcgtgattgacagcgacggccgtcagcaaatggtgtacaagcatgctatc
tccacgttcatgccgcagcgtaatgtgtccctgatgcaggataacaacagcgaacaatag

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