Planococcus sp. MB-3u-03: CW734_11055
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Entry
CW734_11055 CDS
T05387
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
plx
Planococcus sp. MB-3u-03
Pathway
plx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CW734_11055 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plx03019
]
CW734_11055 (rny)
Messenger RNA biogenesis [BR:
plx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CW734_11055 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
GAGA_bind
Motif
Other DBs
NCBI-ProteinID:
AUD14066
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All DBs
Position
complement(1938473..1940032)
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AA seq
519 aa
AA seq
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MGITEFIFALLGIIVGVVVGYFALKKANDSKMAGAKHSAEQVVEDAKREAEALKKEALLE
AKDENHKLRTEAESEIRERRSEMQKHENRLLQREENLDRKDDALNKREAGLERKDQALAE
KQQHIEQMESKAENLVQQQQTEMERISSLTREEAKSIILEQVENELSTDIAVMVKESEAR
AKEESDKKAKNILSLAMQRFAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLTG
IDLIIDDTPEAVILSGFDPIRRETARLALEKLVSDGRIHPARIEEMVEKSRREVDEQIRE
IGEQTTFDVGVHNLHPDLIKILGRLRYRTSYGQNVLKHSVEVAFLSGLMAAELGEDVTLA
RRAGLLHDIGKAIDHEVEGSHVEIGVELGTKYKEHPVVINSIASHHGDTEATSVISVIVA
AADALSAARPGARSETLENYIRRLEKLEEISESYEGVEKSFAIQAGREIRIMVRPEQIDD
MTAHRLARDIRKRIEEELDYPGHIKVTVIRETRAVEYAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgggtattactgagttcatcttcgctttgcttggtatcatcgtcggtgtagttgttggg
tattttgcattgaaaaaggcaaacgattccaaaatggctggcgccaaacattccgcagag
caagtcgtcgaagatgcaaaacgggaagcagaggcgctaaagaaagaagccttgctggaa
gcgaaagacgaaaatcataaattgcgtactgaagctgaatctgaaattcgcgaacgccga
tcggaaatgcagaaacatgaaaatcggttgttgcaaagagaagaaaatttggatcgcaag
gatgatgcattaaacaaacgcgaggccggccttgaacgcaaggatcaggctcttgccgaa
aaacaacagcatattgaacagatggagagcaaagctgagaatttggttcagcagcaacaa
accgaaatggaacggatttcatctttgacacgcgaagaagcgaaaagcatcattctcgag
caagtggagaatgaattgtcgacagacatcgccgtcatggtcaaggaatcggaagcccgt
gccaaagaagaatcggacaaaaaagcgaagaacatcttgtcgctcgcgatgcagcgcttt
gctgcagaccatgtagcggaaacgactgtttccgtggtcaacttgccgaatgacgagatg
aaaggccgcatcatcgggcgtgaaggacgcaatatccggacgcttgaaaccttgaccggc
atcgatttgattatcgatgacacgccggaagcggtcattctttccggatttgatccgatc
cgccgcgaaacggcgcgtctggcacttgagaaattggtgtcggacggccgcatccatcca
gcgagaatcgaagaaatggttgagaagtcaagacgtgaagtcgatgaacaaattcgtgaa
attggggaacaaaccacatttgacgtaggtgtacataacttgcatccagacttgatcaaa
atactcggtcgactccgctaccgcacaagctatggccagaacgtcctgaaacactcagtt
gaagtagcgttcttgtcaggccttatggcagcagagcttggagaagatgtgacactcgca
agacgtgccggattgctccacgatatcggcaaagccatcgaccatgaagttgaaggcagc
catgtggaaatcggcgtcgagctcggaacgaaatacaaggaacatccagtcgtcatcaac
agcatcgcttcccaccacggcgacacagaagcgacttcggtcatttcggtcatcgtcgca
gcagcggatgcattatccgcagcacgcccaggtgccagaagcgaaacgctcgagaactac
atccgccggcttgaaaagctggaagagatttcagagtcttacgagggcgtcgagaaatcg
ttcgccattcaagcaggccgcgagattcggatcatggttcgtccagagcagatcgacgat
atgacagcgcaccgccttgcacgcgatatccgcaagcggatcgaggaagaactggattat
ccagggcatatcaaagtaacggtcatccgcgaaacgcgcgccgttgaatacgcaaaataa
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