Paenibacillus lycopersici: GXP70_01000
Help
Entry
GXP70_01000 CDS
T07013
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
plyc
Paenibacillus lycopersici
Pathway
plyc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GXP70_01000 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plyc03400
]
GXP70_01000 (mfd)
Enzymes [BR:
plyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GXP70_01000 (mfd)
DNA repair and recombination proteins [BR:
plyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GXP70_01000 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_16
RecG_dom3_C
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QHT58695
UniProt:
A0A6C0G211
LinkDB
All DBs
Position
220416..223964
Genome browser
AA seq
1182 aa
AA seq
DB search
MKRGAANLKALLEAYAADTDFGSIVSGIKKGMREQLVSGLAGSSRQVMIAALKREFDRPM
LVVTHNMFAAQKIAEDLVECLSPGEVLLFPANELVAAESAISSPEVLAQRMDVLIRLSQG
FRGIVVVPFSGVRRFLPLNAFMANARILVKVGETLALEAFLRQMVELGYERVDKVEGKGE
MSVRGGIVDFFPLTSPHPYRVEWFDDEIDSIRTFDSSDQRSIEKLDAYTVPPCKELTADL
RRFQNAAQHASELLEQQLQKMTDRTAKDRLRAEIGAEIEKLREHQYFPELYKYISLLYPE
RQTLFDYVPSDTLLIYDEPTRLIETGRQLERDEAEWSTHLMTNGKALPALALARPSDDVL
FHRPFPTLFLSLFLRQIPHTQPQNILNVVSRAMQNFHGQMNVLKTEMERWRKAGATVMML
AGSAERMDRMRRVLQDYGIEPPILIEGNLQSGFELPSVHLIVITEGEMFSQKQRKARRLD
KKMDNAERIKSYTELKVGDYVVHQNHGIGKYMGIGTLEIAGIHKDYMHIMYAGGDKLSVP
IEQIDLIQKYVGNEDKEPKVYKLGGSEWTRVKSKAQSSVKDIADELIKLYAERQATSGFG
FGADTSYQQEFEAMFPYDETSDQLRAIAEIKKDMQTPRPMDRLLCGDVGYGKTEVAVRAA
FKAAIEGKQVAVLVPTTILAQQHYETFRERFSGFPFNVQVLSRFRSKKEQTATMKGLKAG
TVDVVIGTHRLLSQDVIFKDLGLLIVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRT
LHMSMLGVRDLSVIETPPENRFPVQTYVVEYSPSLVRESIERELARGGQVYYLYNRVQGI
YQMAEQINALVPDARVAVGHGQMSEQELEKTILDFLDGESDVLVSTSIIETGVDIPNVNT
LIVHDADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSG
FKIAMRDLSIRGAGNLLGAEQHGFIASVGFDLYSQMLADEIAKRKAEMGGEVEEQPKEVS
TSIDMSIDAYLPSSYIYDSIQKIEIYKKVAAVRTFEEGDDLRDELVDRFGDLPQSVDNLL
SVARLKVYGAICGIEQIGGKGDDITLKFAEREKKRFDAKKVDRICLQLENRFARIPGQEP
HPAVLLRGKGLSVELKLELLERFLTQYKDTIQSKGELQDVTH
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgaggtgccgctaacttgaaagcattattggaagcttacgccgcggatacggat
tttggctccatcgtatccggaatcaagaaagggatgcgcgagcagctcgtctcgggactg
gccggctcgtcgcggcaggtcatgatcgccgcgctcaagcgtgagttcgaccgcccgatg
ctcgtcgtcacccacaatatgttcgcggcgcagaagatcgcagaggatctcgtggaatgt
ctgtcgccgggggaagtgctgctcttccccgccaatgagctggtcgccgccgaatcggcg
atatcgagcccggaagtgcttgcccagcggatggatgtgcttatccggctgtcgcaagga
tttcgcgggatcgttgtcgtgccgttctccggcgttcgccgctttctgccgctgaacgcc
ttcatggcgaacgcgcgcatcctggtcaaggtcggcgagacgctagctttggaagcgttt
ttacggcagatggtagagctcggctacgagcgcgtcgataaagtagaaggcaagggcgaa
atgagcgtccggggcggaatcgtcgatttcttcccgctgacgtcgccgcatccgtaccgg
gtggaatggttcgacgacgaaatcgactccattcggacgttcgactcctccgaccagcgc
tcgatcgagaagctggacgcgtacaccgtgccgccgtgcaaggaactgacggccgatctg
cgccggttccagaatgcagcgcagcatgcgtcggagctgcttgagcagcagctgcagaag
atgacggaccgcacggccaaggaccggctgcgcgcggagatcggggccgagatcgagaag
ctgcgggagcatcagtattttccggaactctataaatatatttcgctgctctatccggag
cggcagaccttattcgattatgtgccaagcgatacgctgctgatctacgacgagccgacc
cggctgatcgaaaccggccgccagctggagcgggacgaagcggaatggtcgacgcatctg
atgacgaacggcaaagcgcttccggcgcttgctttggcgcgcccgtcggacgacgtcctg
ttccaccgtccgttcccgacgctgttcctgtcgctgttcctgcgccaaattccgcatacg
cagccgcagaacatcctgaacgtcgtcagccgcgcgatgcagaacttccacggccagatg
aacgtgctcaaaaccgagatggagcggtggcgcaaggcgggggcgaccgttatgatgctc
gccggcagcgcggagcggatggaccgcatgcggcgggtgctgcaggattacggcatcgag
ccgccgatcctgatcgaaggcaacctgcagagcgggttcgagctgccgtccgtgcacctc
atcgtcatcaccgagggcgagatgttctcgcagaagcagcgcaaggcgcgccgcctcgac
aagaagatggacaatgcggagcggatcaagagctataccgagctgaaggtcggcgactac
gtcgtgcaccagaaccatggcatcggcaaatacatgggcatcggcaccttggagattgcc
ggtatccacaaggactacatgcatatcatgtacgcgggcggcgacaagctgtccgtgccg
atcgagcagatcgacctgattcagaagtatgtcggcaacgaggacaaggagccgaaggtc
tataagctgggcggcagcgaatggacccgcgtgaagagcaaggcgcagtcgtccgtcaag
gatatcgccgacgagctcatcaagctgtacgccgagcggcaggcgacgtccgggttcggc
ttcggggcggatacgtcgtaccagcaggaattcgaagcgatgttcccgtacgacgagacg
agcgaccagctccgcgcgatcgcggagatcaagaaggatatgcagacgccgcgtccgatg
gatcgcttgttgtgcggcgacgtcggttacggcaagaccgaggtggcggtgcgcgccgcg
ttcaaggcggcgatcgagggcaagcaggtcgcggtgctcgtgccgacgacgattctcgcg
cagcagcattacgagaccttccgcgaacggttctcgggcttcccgttcaacgtgcaggtg
ttaagccggttccggtccaagaaggaacagacggcgacgatgaaaggattgaaggcgggc
acggtggacgtcgtgatcggcacgcaccgcctgctgtcgcaggacgttattttcaaggat
ttgggactgctcatcgtcgacgaggagcagcgtttcggcgtgtcgcacaaggagaagctg
aagcggctcaagacgaacgtcgacgtgctgacgctgacggcgacgccgattccgcgtacg
cttcacatgtccatgctcggcgtgcgcgacttgtcggtcatcgagacgccgccggagaac
cggttcccggtgcagacgtacgtcgtggaatacagcccgtcgctcgtgcgggaatcgatc
gagcgcgagctggcgcgcggcggacaggtgtactacctgtacaaccgggtgcaggggatc
tatcaaatggcggagcagatcaacgcgctggtgccggatgcgcgggtggcggtcggccac
ggccaaatgtccgagcaggagctggagaagacgattctcgacttcctcgacggggagtcg
gacgtgctcgtcagcaccagcattatcgagacgggcgtcgacattccgaacgtcaacacg
ctgatcgtgcacgacgcggataaaatgggcttgtcccagctgtaccagctgcggggccgg
gtcggacgttccaatcggatcgcgtacgcgtatttcacgtaccagcgggataaagtactg
acggaggtcgccgagaaacgactgcagtcgatcaaggaattcacggagctcggctccggg
ttcaagatcgcgatgcgcgacttgtcgattcgcggcgcgggcaacctgctcggcgcggag
cagcacggcttcatcgcgtccgtcggcttcgatctgtattcgcaaatgctggccgacgag
atcgccaagcgcaaagccgaaatgggcggcgaggtcgaggagcagccgaaggaagtgagc
acgtcgatcgatatgagcatcgatgcctacttgccctcctcttatatttacgatagcata
caaaagatagagatttacaaaaaggtcgccgcggtccgcaccttcgaagaaggcgacgat
ctgcgcgacgagctggtcgaccggttcggcgatctgccgcagtcggtggacaatctgctg
tccgtggcccgtctcaaggtgtacggcgcgatttgcggcatcgaacagatcggcggcaag
ggcgacgatattacgcttaaattcgcggaacgggagaagaagcggttcgatgcgaagaag
gtggaccgcatctgcctgcaattggagaacaggttcgcgcgcattccgggacaagagcct
catccggccgtgctgctgcgcggcaaagggctgtccgtagagctgaagctggagctgttg
gaacggtttttgacgcagtataaagatactatccaatcgaaaggggaactacaggatgtt
acgcattaa
DBGET
integrated database retrieval system
