Paenibacillus lycopersici: GXP70_02025
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Entry
GXP70_02025 CDS
T07013
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
plyc
Paenibacillus lycopersici
Pathway
plyc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plyc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GXP70_02025 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plyc03021
]
GXP70_02025 (rho)
03019 Messenger RNA biogenesis [BR:
plyc03019
]
GXP70_02025 (rho)
Transcription machinery [BR:
plyc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
GXP70_02025 (rho)
Messenger RNA biogenesis [BR:
plyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GXP70_02025 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
ATPase_2
AAA
S1CSD-TOTE-2
OB_RNB
Spore_III_AA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QHT58877
UniProt:
A0A6C0FPQ8
LinkDB
All DBs
Position
454045..455409
Genome browser
AA seq
454 aa
AA seq
DB search
MSELQIADLEGMKLTELYKLAKQHQIQGYGQLKKRELIFAILRAQAEQSGLMFMQGVLEI
LPEGFGFLRPINYLPSPEDIYISASQIRKFDLRTGDVVSGKCRAPKENERYFGLLQVNAV
NGESPEHAAERLHFPALTPLYPEKKLVLETAQSKLSTRIMDLLAPVGLGQRGLVVAPPKA
GKTQLIKEIANSISINNPEIELFVLLIDERPEEVTDMSRSVKGEVVASTFDELPENHIKV
AELVLERALRLVEHKKDVVILLDSITRLARAYNLVVPASGRTLSGGIDPAAFHRPKRFFG
SARNVEEGGSLTILATALVETGSRMDDIIYEEFKGTGNMELHLDRKLADRRIFPALDIRR
SGTRREEMLLTKEQLDKVWAIRKNMNDSIEFIDGFLKKLADTKNNEEFLASLDTSGTTPP
APRGRSGASAGGSASGGGTNGTSRRPASRSTTVT
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaacttcagatcgcggatcttgaagggatgaagctcacggagctttataagctg
gccaagcagcaccaaattcagggctacggccaactgaagaagagagaactgatttttgcg
attttacgtgcgcaagcggaacaaagcggccttatgtttatgcagggcgtgctcgagatt
ttaccggaaggcttcggcttcctgaggccgatcaactatttgccaagcccggaggatatt
tatatttcggcttcccagattcgcaagttcgatctccgcacgggggacgtggtttccggc
aaatgccgggcccccaaagaaaatgaacgttattttggcctcctccaggtcaatgccgtt
aacggagaaagccccgaacatgctgcggaacgccttcattttccagccttgactccgctc
taccccgagaagaaactcgttctcgaaaccgctcagtccaaactttcgacgcgcatcatg
gatttgctcgccccggtcggtctcggacagcgcggactggtcgtcgctccgccgaaagcg
ggcaagacgcagctcatcaaggaaatcgccaacagcatctcgattaacaatcccgagatc
gagctgttcgtgctgctaatcgacgagcgcccggaggaagtgacggatatgtcgcgttcc
gtcaaaggcgaggttgtcgcatcgaccttcgacgagctgcccgagaaccatatcaaggta
gcggaattggtattggaacgcgcgctgcggctggtcgagcataagaaggacgtcgttatc
ctgctggacagcatcacgcggcttgcgcgtgcctataacctggttgtgccggcttcgggc
cgtacgctcagcggcggtatcgatcctgcggcgttccatcgtccgaaacggttcttcggc
tccgcgcggaacgtggaagaaggcggcagcctgacgattctggcaaccgcgctcgtggag
acgggatcccgtatggatgatatcatttatgaagaatttaagggtacgggcaacatggag
ctgcatctcgaccggaagctggcggaccgccggattttccctgcgctggatatccgccgc
tcgggtacgcgccgcgaagaaatgctgttgaccaaggagcagctcgacaaagtatgggcg
atccggaagaacatgaacgattccatcgaatttatcgacggcttcctgaagaagctggcg
gatacgaagaacaacgaggagtttctggcttctctcgatacgtcgggcactacgccgcct
gcgccgcgaggcaggtcgggcgcaagcgccggcggcagcgcgtccggcgggggaacgaac
ggcacttcccggcgtccggcctcgcgttccacgacggtgacctag
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