KEGG   Paenibacillus lycopersici: GXP70_06015
Entry
GXP70_06015       CDS       T07013                                 
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
  KO
K03090  RNA polymerase sigma-B factor
Organism
plyc  Paenibacillus lycopersici
Brite
KEGG Orthology (KO) [BR:plyc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:plyc03021]
    GXP70_06015
Transcription machinery [BR:plyc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     GXP70_06015
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r4_2 Sigma70_r3 HTH_23 Sigma70_ECF GerE HTH_24 HTH_38 HTH_3 HTH_Tnp_4 MarR HTH_10 MarR_2 HTH_7 HTH_28 DUF1492 HTH_29 HTH_31 KORA Xre-like-HTH HTH_37 DUF6362 Phage_antitermQ
Other DBs
NCBI-ProteinID: QHT59551
UniProt: A0A6C0FVQ7
LinkDB
Position
complement(1397564..1398337)
AA seq 257 aa
MSPQPAKQHPITGAELIIAYQDNPDNTIAEQLITHYEPMVRMAAGKISRNRPDLYEDLMQ
VGQIALLRLFSQFDSSLGMQFEPYAMKSIIGHMKNFLRDKSWYIQVPRRIKEKGIAVQQV
IDALTVKLERSPLIEEISAEMSLSVEETTEILAGRDLYHYVSLDTPVSEEDNAASLGDLL
GSPGDDFDDVDRRLDLQAALSQLKPQEQEVLLLAYSEGLPQRQIAERIGISQMSVSRIQR
RAIDKLKTLLGEQSEEV
NT seq 774 nt   +upstreamnt  +downstreamnt
atgagccctcagccggccaagcagcaccccatcaccggcgccgagctcataatcgcttat
caggacaatcccgacaatacgatcgccgaacagctgattacgcattatgagcctatggtt
cgcatggcagccgggaaaatctcgcggaaccgccccgacctgtacgaggatctcatgcag
gtcggccaaatcgccctccttcgtctattcagtcaattcgacagctcccttggcatgcag
tttgaaccgtacgccatgaagagcatcatcggacatatgaagaacttccttcgcgacaaa
tcctggtacatccaggtgccgcgccgcatcaaagagaaaggcatcgccgtgcagcaggtg
atcgacgcgctgaccgtcaagctcgaacgatcgccgctgatcgaggagatctccgcggag
atgtcgctttccgtcgaagagacgaccgagattctggccggccgcgacctgtaccattac
gtgtcgctggatacgccggtttcggaggaggacaatgccgcctccctcggggacttgctc
ggttcgccgggcgacgatttcgacgacgtcgacaggcggctcgacctgcaggcggcactg
tcgcagcttaagcctcaagagcaggaagtgctcctgctcgcttattcggaaggattgccg
cagcgccagatcgccgaacggatcggcatctcgcagatgagcgtctcgcgcattcagcgc
cgcgccatcgacaagctcaagacgctgctcggcgaacagtccgaggaagtctga

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