Paenibacillus lycopersici: GXP70_27715
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Entry
GXP70_27715 CDS
T07013
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
plyc
Paenibacillus lycopersici
Pathway
plyc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plyc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GXP70_27715 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plyc03021
]
GXP70_27715 (rpoC)
03400 DNA repair and recombination proteins [BR:
plyc03400
]
GXP70_27715 (rpoC)
Enzymes [BR:
plyc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GXP70_27715 (rpoC)
Transcription machinery [BR:
plyc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GXP70_27715 (rpoC)
DNA repair and recombination proteins [BR:
plyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GXP70_27715 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QHT63369
UniProt:
A0A6C0G642
LinkDB
All DBs
Position
complement(6323557..6327180)
Genome browser
AA seq
1207 aa
AA seq
DB search
MLDVNNFEYMKIGLASPDKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ
DIDVERELEQLKEDLRTAQGQRRNRAIKRLEVIEAFRNSGNMPEWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMFQCGLPKE
MALELFKPFVMKELVNKNLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLASGNIL
NPKDGKPVVTPSQDMVLGSFYLTMDNKEGKGSGSVFATVNEAISSYQRGIVSLHARIFIP
VKVLKKTSFTDAQQKALICTTVGKVIFNEIFPADFPYINEPSKVNLLQGTPDKYFVHEKG
ADLLQFMDGLSQIGGVGKEYLGLVIAECFRQYHTTRTSVMLDDIKQLGFTYSTRAGITVA
VADVVVPAEKKEILRESEDKVKVVTNQYRRGLITNEERYDRVIEIWSKTKDQITDILMKS
MDRYNSIMLMVDSKARGNKSQITQLGGMRGLMANPSGRIIELPIKSNFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTDKGFLVSKIQDGKEVIEDL
YDRIEGRYSFETVRHPKTGEVILHRNELIDSNKAEAIVEAGVERLQIRSVLSCRARHGVC
KICYGRNLATGKFVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQAIISEIDGVIKDIRETKDRREIEVQGEAESKVYSVTFGSRIRVVKGKQIEA
GDELTDGSIDPKDMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHIEVMVKQMLRKIRI
IEAGDTPLLPGAFVDIHEYEAANREAILSGNEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMQRYRSVHVAGMDDDQLDEQQLEA
ETVSVES
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
ttgttggacgtgaacaacttcgagtatatgaagattggattggcatctccggataaaatc
cgatcgtggtcccgcggagaagtaaagaaaccggaaacgattaactacagaacattgaag
ccggagaaagaaggtcttttctgcgagaagatcttcggaccgacgaaagactgggaatgc
cactgcggcaagtacaaacgcgttcgttacaaaggcgtcgtctgcgatcgctgcggcgtc
gaagtaacgcgggcgaaagtgcgccgcgaacggatgggacacatcgagcttgcggctccc
gtatcgcatatttggtatttcaaaggcatcccaagccggatggggcttgcgctcgacatg
tcgccccgctcgctggaagagatcatttacttcgcatcttatgtcgtgacggatccgggc
gatacgccgcttgagaagaagcagctgctgtccgagaaggaataccgcagctaccgcgag
aagtacggctacggcttccaggcgggaatgggcgcggaagcggtcaagaagctgctgcag
gacatcgacgttgaacgcgagcttgagcagctgaaagaagatttgcgtacggcacaaggc
caacgccgtaaccgtgcgatcaagcgtcttgaagtcatcgaggcgttccgcaactccggc
aatatgccggaatggatgatccttgacgtgctgccggtcatcccgccggagcttcgcccg
atggtgcaattggacggcggacgtttcgcgacgtccgacttgaacgatctgtaccgccgt
gtcattaaccgtaataatcgtctgaagcgtctgcttgatctgggcgcgccggacattatc
gtgcagaacgagaagcggatgctgcaagaagcggtagacgcgctgatcgataacggccgc
cgcggccgccctgtaacgggtccgggcaaccgtccgcttaaatcgctcagccatatgctg
aaaggcaaacaaggacgtttccgtcagaacttgctcggtaaacgggtcgactattccggt
cgttccgttatcgtcgtcggtcctagcctgaaaatgttccagtgcggtttgccgaaagaa
atggcgctcgagctcttcaagccgttcgtcatgaaagagctggtcaacaagaacctggcg
cataacatcaagagcgcgaagcgcaaagtcgaacgcgtcagccctgaagtgtgggatgtg
ctcgaagaagtaatcaaggagcacccggtcctcctgaaccgtgccccgacgcttcacaga
ctcggcatccaggctttcgagccgatcttggtcgaaggccgcgccatcaagcttcacccg
ctcgtatgtacggcgtataacgccgacttcgacggtgaccaaatggccgttcacgtaccg
ctttccgcggaagcgcaagctgaggctcgtctgctgatgctggcttcgggcaacattttg
aacccgaaagacggcaagcctgtcgttacgccttcgcaggatatggttctcggcagcttc
tacttgacgatggataacaaagaaggcaaaggcagcggctccgtgttcgcgacggtcaac
gaagcgatttcgtcgtaccagcgcggtatcgtgtcattgcatgcgcggatcttcatccct
gtcaaggtgctgaagaaaacgtccttcacggatgcgcagcaaaaggcgctcatttgcacg
actgtcggcaaagtgattttcaacgaaattttcccggccgatttcccttacatcaacgaa
ccgtccaaggtgaacttgctgcaaggcacgccggataaatattttgtccatgagaagggc
gcggatctccttcagttcatggatggcttgtcgcaaatcggcggcgtaggcaaagagtac
ctcggcttagttattgcggaatgcttccgtcaataccatacgacgcgtacttccgtcatg
cttgacgacattaaacaactcggattcacgtattccacgcgcgcaggcatcacggttgcc
gttgcagacgttgtcgtgccggcggagaagaaggaaatcctgcgggaatccgaagataaa
gttaaggtcgttacgaatcagtaccgccgcggtctgattacgaacgaagaacggtatgac
cgcgttatcgagatctggagcaaaacgaaggatcagattacggatatcctcatgaaatcg
atggaccgctacaactccatcatgctcatggtcgactccaaagcgcggggcaacaaatct
caaatcacgcagctcggcggcatgcgcggtctgatggccaacccatccggccggatcatc
gagttgccgatcaaatcgaacttccgcgaaggcctgaccgtcctcgagtacttcatctcg
acgcacggcgcgcgtaaaggtcttgccgataccgccctgcgtacagcggactcgggttac
ctcacgcgccgtctcgtcgacgttgcgcaggatgttatcgttcgcgaagacgattgcggt
acggacaaaggcttcctggtcagcaagatccaggacggcaaagaagtcatcgaggacctg
tacgaccgtattgaaggccgctactcgttcgagaccgtacgtcatccgaagacgggcgaa
gtcatccttcatcgcaatgagctgatcgattccaacaaagcggaagcgatcgtagaagct
ggcgtcgaaaggttgcagatccgttccgtactgagctgccgcgcgcgtcacggcgtatgt
aaaatctgttacggacgcaatctggcgacaggcaagttcgtggagatcggggaagccgtc
ggcattatcgcggctcaatcgatcggcgagccgggcacgcagctcaccatgcgtacgttc
cacaccggcggcgttgccggcgacgacatcacgcaaggtttgccgcgtatccaggagctt
ttcgaggcgcgtaatccgaaaggtcaagcgatcatttcggagatcgacggtgtcatcaaa
gacatccgcgagacgaaggaccgccgcgaaatcgaagttcagggcgaggcagagtccaaa
gtctattcggtcactttcggttcccgcatccgcgtagtcaaaggcaagcaaatcgaagcc
ggcgacgagctgacggacggttcgatcgacccgaaagacatgctgcgcattaagggcatc
cgcggcgtgcagaactatatccttcaggaagttcagcgcgtataccggaaccagggcgta
gaaatcaacgacaagcatatcgaggttatggtgaagcagatgcttcgcaaaatccgcatc
atcgaggccggcgatacgccgctccttccgggcgcgttcgtcgacatccacgagtacgaa
gcggctaaccgcgaagcgattctgtccggtaacgagccggcagtcgcgaagccggtgctg
ctcggtattaccaaagcatccctggagacggattccttcctgtccgcagcttcgttccaa
gagacgacacgtgtcttgaccgacgccgcgatcaaaggaaaagtcgaccaactgctcggt
ctgaaagagaatgtcatcatcggcaagctgattcctgcaggcacgggcatgcagcgctat
agaagcgtgcatgtagccggcatggacgatgaccagctcgacgagcagcagcttgaggcc
gagacggtatccgtcgaatcttaa
DBGET
integrated database retrieval system
