Paenibacillus lycopersici: GXP70_27930
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Entry
GXP70_27930 CDS
T07013
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
plyc
Paenibacillus lycopersici
Pathway
plyc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GXP70_27930 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plyc03400
]
GXP70_27930 (uvrB)
DNA repair and recombination proteins [BR:
plyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GXP70_27930 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GXP70_27930 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
UvrD-helicase
AAA_22
AAA_30
DUF1280
AAA_16
AAA_5
AAA_7
fvmX5
DUF87
Motif
Other DBs
NCBI-ProteinID:
QHT63403
UniProt:
A0A6C0G526
LinkDB
All DBs
Position
complement(6379315..6381318)
Genome browser
AA seq
667 aa
AA seq
DB search
MVERQEQGGIFALKSDYTPQGDQPEAIRQLVNGVEAGMMHQTLLGATGTGKTYTIANTIA
KLNRPTLVIAHNKTLAAQLCSEFKEFFPDNAVSYFVSYYDYYQPEAYIPSSDTFIEKDSS
INDEIDKLRHSATSSLFERRDVIIVASVSCIYGLGSPIEYGKLVLSLRVGMEKPRDAILH
KLVDIQYQRNDINFIRGTFRVRGDIVEIFPVAGSERAIRVELFGDEIERITEIDVLTGEI
VGERDHVAIFPASHFVTHEDTMKIAIKNIERELEERLAELHANGKLLEAQRLEQRTRYDL
EMMQEMGFCSGIENYSGPLTFRERGATPYTLMDYFPDDMLIVIDESHVTLPQIRAMYNGD
RARKEVLVEHGFRLPSAMDNRPLRFEEFEAKVKQAIYVSATPGPYELEHCPEMIQQIIRP
TGLVDPIVEVRKTKGQIDDLLGEIRDRIAKDERVLVTTLTKKMSEDLTDYLKDVGIKVRY
LHSDIKTLERLAILRDLRIGTFHVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSL
IQTMGRAARNAEGRVIMYADRITDSMATAIGETERRRAIQTAYNEKHGITPQTIRKKVHD
VIEATKAAEEKSDYLTGIGAEKMSKKERQALLQRLEAEMKEAAKSLQFERAAELRDALLE
LKAELGL
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggttgaacggcaggaacaaggcgggattttcgcgctcaaatcggactatacgccgcaa
ggcgatcagccggaggcgatccggcagctcgtgaacggcgtagaagcgggcatgatgcac
cagacgctgctcggcgcgacagggacggggaagacgtacacgatcgccaatacgatcgcg
aagctgaaccggcccacgcttgtcatcgcgcataacaagacgctggcggcgcagctttgc
agcgagttcaaggagtttttcccggacaacgcggtctcctatttcgtcagctattatgat
tattatcagccggaagcctacatcccttcctccgatacgttcattgagaaggactccagc
atcaatgacgagatcgacaaactgcggcactccgcgacaagctccctgttcgaacggcgg
gacgtcatcatcgtcgcgagcgtgtcctgcatctacggcctcggttctccgatcgagtac
gggaagctcgttctgagcctccgcgtcggcatggagaaaccgcgcgacgccattctccac
aagctcgtcgacattcaataccagcgcaacgacatcaatttcatccgcggcacgttccgc
gtccggggcgatatcgtcgagattttcccggttgcgggcagcgagcgggccattcgcgtg
gagctgttcggcgacgagatcgagcgcattaccgagatcgacgtcctgaccggcgagatc
gtcggcgaacgcgatcatgtcgccatcttcccggcgtctcacttcgtcacgcacgaagat
acgatgaagatcgccattaagaatatcgagcgggagctggaagaacggcttgcggagctt
catgcgaacgggaagctgctggaggcgcagcggctcgagcagcggacgcgctacgatctc
gagatgatgcaggagatgggcttctgcagcggaatcgagaactactcgggaccgctcacg
ttccgcgagcggggcgcgacgccgtacacgctgatggactatttccccgacgatatgctg
atcgtcatcgacgaatcccatgttacgcttccgcagatccgcgcgatgtacaacggcgac
cgcgcgcggaaggaagtgctcgtggagcacggcttccggctgccgtccgccatggacaac
cggccgcttcgtttcgaggaattcgaggcgaaggtgaagcaggccatttacgtgtcggct
acgccgggcccttacgagctggagcattgtccggaaatgatccagcagatcatccgtccg
accggactggtcgatccgatcgtcgaagtgcgcaagacgaaggggcagatcgacgacctg
cttggcgagatccgcgaccggatcgccaaggacgagcgcgtcctcgtcacgacgctgacg
aagaagatgtcggaagacttgacggactacctgaaggatgtaggcatcaaggtgcgctat
ctgcattccgacatcaagacgctggagcgtctggccattctgcgggatttgcggatcggc
acgttccatgtgctcgtcgggatcaacctgctgcgggaaggcttggacttgccggaagtt
tcgctcgtagccatcctggatgcggacaaggaaggcttccttcgttcggagcgctccctc
attcaaacgatgggccgcgcggcgcgcaacgccgaaggccgggttattatgtacgcggac
cgcataacggattccatggcgaccgctatcggcgagacggagcgccgccgcgccatacag
accgcctataacgagaagcacggcattacgccgcagacgatccgcaagaaagtgcatgac
gtcatcgaggcgacgaaggccgccgaagagaagagcgattatttgacgggcatcggggca
gagaagatgtcgaagaaagagcgccaggcgctgctgcagcgcctggaagcggagatgaag
gaagcggccaagagcctgcagttcgaacgcgctgcggagcttcgcgacgcgctgcttgag
cttaaagcggagttgggcctatag
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