Pseudoalteromonas luteoviolacea: S4054249_08755
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Entry
S4054249_08755 CDS
T04577
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
plz
Pseudoalteromonas luteoviolacea
Brite
KEGG Orthology (KO) [BR:
plz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plz03019
]
S4054249_08755
Enzymes [BR:
plz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
S4054249_08755
Messenger RNA biogenesis [BR:
plz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
S4054249_08755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
HA2_N
nSTAND3
NACHT
T2SSE
Cas3-like_C_2
SLFN-g3_helicase
ABC_tran
PhoH
LYTB
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
AOT07927
LinkDB
All DBs
Position
1:2045596..2049477
Genome browser
AA seq
1293 aa
AA seq
DB search
MDLKSLYSDIPFCLKKDQFLFRKRLQGVKKIADEKKQQKVVAQIGESIARSQQLKTQRQE
GLPQVTYPESLPVSQKKEDIKKAIAENQVVIVAGETGSGKTTQLPKICLELGRGIDGYIG
HTQPRRLAARSVANRIAEEVGCQLGEEVGFKIRFSDQVSDRSYVKLMTDGILLAEIQQDR
FLNQYDTIIIDEAHERSLNIDFILGYLKNLLPKRPDLKVIITSATIDPERFSKHFNDAPI
IEVSGRTFPVEVRYRPVIDVSGEESEAENDQLQGIFDAVDELCEAGSGDILIFMNGEREI
RDTADALSKRNLKGVEILPLFARLSNAEQNRIFAAHSHRRIVLATNVAETSLTVPGIRYV
IDPGTARISRYSYRTKVQRLPIEAVSQASANQRMGRCGRVAAGICIRLYSEEDFLGRPEF
TDPEILRTNLASVILQMLALGLGDIAKFPFVQAPDSRNIKDGMALLEELGAVKPASRREN
AKLTQDGRKLSRLPIDPRLAKMVMASVQQGALNEVIVIAAALSIQDPRERPQEKRGAADE
KHGRFDDPNSDFMAFLNLWQYLEEQQEALSRSQFRKQCQKDFLAYMRIREWQDIVYQLKT
VCDEMDFKGSGNEAGFDAIHQSLLSGMLSHIGMKDEKQHYKGARNSLFHIFPGSALFKKS
PKWLMSAELVETSKLYARINAKIDLAWVAPLAQHLVKRSYSEPHWEKKQGAVIAFEQQTL
YGLTIVSRKRTVYSQIDPVISRALFIKEALIGQQLGQKSQFLEYNQSLVDEIQSLENKAR
RRDILVDEQAMFEFYDQRIPSDVNNRATFNHWFKKQSDKRVLHMSRESLMQHDADKVTAF
DYPDIWQQGNLTLPLNYHFEPGKAVDGVTVNIPLALLNQVQNEGFDWHIPALRHELICAL
IKSLPKTLRRNFVPAPNYADAVLASIEPLQGPLLESLATRLLRMTGVKVSETDWDIGSLE
NHLKMQFEVVDDAGKVIAHGFDLDALKEKLQGKVSQTLSKVAEKGIEQEELTEWVFGELP
KEYTKTQGGYEIKAFPALVDKKDSTAITLFDHPEKAAQAHRLGLRRLVLLNIPSPVKYLQ
QHLPNKAKLGLYFNPFGKIHDLISDCTAAGVDSLLKQFDTVRDEAEFERAKEFIRGELGD
KVVQIASQVEQVLSIAHSVNKRMKGRVDLTMITAHGDIKSQLESLIFRGFVSEHGADKIT
DLLRYLKAIEKRLEKLPVDPNRDRLCVLELEKVSELYAQKCNKVPKGMPVPENLAHIFWM
IQELRVSLFAQTLGTPYPISSKRVTNALNELDL
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
gtggacttaaagtcgttgtattcagatattcctttttgcttaaagaaggaccagttttta
tttagaaaacgtctgcaaggtgttaaaaaaatagccgatgagaaaaagcaacaaaaagtg
gttgctcagatcggtgagtccattgcgcgaagccagcagttgaagacccagcgtcaagag
gggctacctcaagttacctatcctgaatccttaccagtaagccagaaaaaagaagacata
aagaaagcgattgctgagaatcaagtggttatcgtagccggtgaaacgggctcaggcaaa
acgactcaattaccaaaaatttgtcttgagcttggccgtggtatcgatggttatattggt
catacgcagccccgtcgacttgcagctagaagtgtcgccaatcgtatcgcagaagaggta
ggttgtcagcttggtgaagaggttggttttaaaatccgatttagtgatcaagtttctgac
agaagttacgttaagctgatgacagatggtattttactggcagaaattcaacaagataga
tttttaaatcaatacgacaccatcataattgatgaagcacacgagcgaagccttaatatc
gactttattctgggttatctgaagaacttacttccaaagcgtccagatcttaaagtgatt
attacatctgcaaccattgatcccgagcgtttttcaaagcactttaacgatgctccaatt
attgaagtatcaggaagaactttcccggttgaagtacgctatcgccccgtaatcgacgtg
tctggtgaagaaagtgaagctgaaaatgaccagctacaggggatatttgacgcagtagat
gaactgtgtgaagccggctccggtgatattctcattttcatgaatggcgagcgagaaatc
cgtgatacagctgatgcattatcaaagcgcaatttaaaaggcgttgaaattttaccgttg
tttgcgcgtttatctaatgcggagcaaaaccgaatatttgcggcgcacagtcatcgtcga
atagtgcttgctactaacgtagctgaaacatcattgacagttcctggtattcgatatgtt
atagatccaggcaccgcacgtataagtcgttatagctaccgaacaaaagtacaacgtcta
ccgatagaagcggtttctcaagcgagtgcaaaccagagaatgggccgatgcggccgtgtc
gctgcgggtatctgtattcgtctgtactctgaggaagacttcttagggcgaccagaattt
actgatcctgagatcctgcgtaccaatcttgcatcagtcattttgcagatgcttgcgctt
ggtcttggtgatatcgcaaagttcccatttgttcaggcgccagatagtcgcaatatcaaa
gatggtatggcgttgcttgaagagctgggagccgttaagcctgcttcgcgcagagaaaac
gccaagttgactcaagatggtagaaagttaagccgtttacctattgatccgcgtctggca
aaaatggtgatggcatcagtacaacaaggcgctttaaacgaagtgatcgttattgctgcg
gcgctctccattcaagaccctagagaaaggcctcaagaaaagcgcggagcggcagatgaa
aagcatggccgctttgacgacccaaattcagactttatggcgtttttgaatctgtggcaa
tatttagaagagcagcaagaggcgctgtcgcgaagccaatttagaaagcaatgtcaaaaa
gactttttggcctatatgcggatccgtgaatggcaagacatcgtttaccaattaaaaaca
gtgtgcgacgaaatggactttaaaggttcaggcaacgaagcaggttttgatgccatccac
caatctttgctgagcggcatgctcagtcatattggtatgaaagacgaaaagcagcactat
aaaggagcaagaaacagtttgttccatattttcccaggctctgcattatttaagaaaagt
ccaaaatggctaatgtcggccgagcttgttgaaacaagtaagctttatgcaaggatcaat
gcaaaaattgacttggcatgggttgctcctttggcgcaacatttggtgaagcgcagttac
agtgagcctcattgggagaaaaagcaaggtgcagtcatcgcgtttgaacaacaaacgctt
tatggtttgaccatcgtttctagaaagcgcactgtttacagccaaattgatccagttatt
agccgggcgttattcattaaagaggcgcttatcggccagcagctgggacaaaaatcacag
ttcttagaatacaaccagtcacttgttgacgagatccaatcattagaaaataaagccaga
cgccgagatattttggtggatgagcaagcaatgtttgaattctatgaccagcgcattccc
agtgatgtaaataaccgagctacatttaatcactggtttaaaaagcaaagtgataaacgt
gtgttgcatatgagcagagaatcattaatgcaacacgatgctgacaaagtcaccgctttt
gattatccagatatttggcagcaaggtaatttgacgctacctcttaattatcattttgaa
cctggaaaagcggttgacggtgtgaccgtcaatattcctttagcccttttgaatcaagtt
caaaatgaaggttttgattggcatatacctgcgctgaggcatgagttgatctgtgcactc
attaagagcttacctaagactctgcgcagaaactttgtacccgcacctaactatgctgac
gcggtgttagcctcgattgagccactgcaagggcctttgcttgaatctttggcgactagg
ttgttacgtatgactggtgttaaagttagtgaaactgattgggatataggctcgcttgaa
aaccacttgaagatgcaatttgaagtggtcgatgatgcaggaaaagtgattgctcatggt
tttgatttagatgcacttaaagagaagcttcagggtaaagtgtctcaaactttatctaag
gtggctgaaaagggcattgagcaagaagagctcactgagtgggttttcggcgaattaccc
aaagagtacaccaaaacacagggcggttatgaaattaaggcttttccagcactggttgat
aaaaaagacagtaccgcgataacgttatttgaccaccctgagaaagctgctcaagcacac
cgtttaggcctgcgtagactggtactgctcaatatcccttcaccggttaaatatttgcaa
caacacctacctaacaaagcgaagttaggtttgtatttcaatccatttggtaaaattcat
gatttgatttcagattgcacagcggctggagtagatagcttgcttaaacagtttgatacc
gttagagatgaagccgaatttgagcgcgcgaaagagtttattcgcggtgaacttggcgat
aaagtggtgcaaattgcttcgcaagttgagcaagtactaagtatcgcacacagtgtgaat
aagcgtatgaaagggcgtgtagatttgactatgataaccgcacatggtgatatcaaatct
cagcttgaatcactgatattcagagggtttgtcagtgagcacggtgctgataaaattaca
gatttattgcgttatttgaaagcaattgaaaagcggttagaaaaattacctgttgatcct
aaccgagatcgtttatgcgtactagagttagaaaaggtaagtgagctttatgcgcaaaag
tgtaataaggtaccaaagggcatgcctgtacctgaaaatctagcacatattttttggatg
attcaggaactaagagtgtcattattcgctcaaacattaggtacgccttatccgatttca
tctaagcgtgttacgaatgcactaaatgaattggatttatag
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