Pseudoalteromonas luteoviolacea: S4054249_14120
Help
Entry
S4054249_14120 CDS
T04577
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
plz
Pseudoalteromonas luteoviolacea
Pathway
plz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
S4054249_14120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plz03019
]
S4054249_14120
Enzymes [BR:
plz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
S4054249_14120
Messenger RNA biogenesis [BR:
plz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
S4054249_14120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
ERCC3_RAD25_C
Helicase_C_4
Cas3-like_C_2
AAA_30
CMS1
Motif
Other DBs
NCBI-ProteinID:
AOT08925
LinkDB
All DBs
Position
1:complement(3360954..3362186)
Genome browser
AA seq
410 aa
AA seq
DB search
MSFQSLNLADELNQALAQLEFTEPTQIQALSIPLILEGKDLLATAQTGTGKTAAFMLPIL
NTLLQSEFDTPAVRALVLAPTRELAQQVAKDTKRLAKFSHLKVACLYGGANIGPQEKILK
EGVDIVIATPGRLLDHMIKGTLSLNAISHLVFDEADRMLDMGFIGEIKRIMRKMPESRQT
MLFSATMDESVLSQIKMWLNTPERVGVEQQNSTADKVEQTFYAVDEDRKRELISHLIGKN
NWQQVLVFTRTKKSADEYASELNKDGLATLSIHGDKSQGARERALEQFKSGKTRVLVATD
VAARGIDIKALNYVINVELPYVAEDYIHRIGRTGRAGNSGQSISLVSIDEQWLLEEIEVL
LDTRLTPQWLPGYEPDLTKEPKDDRKNSAKSRKQRDKKRILGQRTRRRKK
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgtctttccaatctttaaatcttgcagatgaactcaatcaagcgctagcacagttagag
tttactgagccaacacaaatccaagcgctgagtattccactcattttagagggcaaagat
ttactggctacagcccagaccggcacaggtaaaactgcggcttttatgctgccaatctta
aataccctattgcaaagtgaatttgatacgcccgcggtacgcgctttggtacttgcaccg
actcgagagctggcgcaacaagtcgctaaagacaccaaacgcttggcgaaatttagtcat
ttaaaggtggcttgcttgtatggcggcgctaatattggtcctcaagaaaagatcttaaaa
gaaggggtcgacattgtcattgctacgcctgggcggttactggatcatatgatcaaaggg
actttgtccctcaatgccatttctcatctggtgtttgatgaagctgatcgcatgttggac
atgggctttatcggcgaaattaagcgcattatgcgtaaaatgcctgaaagtcgtcaaaca
atgttgttctcggcaacaatggatgaaagcgtgctgtcgcaaataaaaatgtggctgaat
acgccagaacgtgttggtgtggagcagcaaaacagcacagcagacaaggttgagcaaact
ttttatgcggtggatgaagaccgtaaacgtgaactgatatcgcacctcattggcaaaaat
aactggcagcaagtgctggtatttacacgaactaaaaagagtgctgatgagtacgcaagt
gagctgaataaagatggtttggcgacgctttctatccatggtgataagtcccaaggtgca
cgagagcgtgcattagaacaattcaaatcaggcaaaacacgcgtgctcgttgctacggat
gttgcggcacgcggcatcgacataaaagcattgaattatgtgattaatgttgaacttcct
tatgtagcagaagattatattcaccgtattggacggacaggccgtgctggaaacagcggc
caatcgatttctttagtgagtattgatgagcagtggttattggaagaaatagaagtatta
ctcgatacccgacttacacctcagtggttgcccggctatgaacctgatttaaccaaagaa
cctaaagacgatcgtaaaaactcggcgaaatcgagaaagcaaagggataaaaagcgcatt
ttagggcagcgtacaagacgcagaaaaaaataa
DBGET
integrated database retrieval system
