Pseudoalteromonas luteoviolacea: S4054249_16345
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Entry
S4054249_16345 CDS
T04577
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
plz
Pseudoalteromonas luteoviolacea
Brite
KEGG Orthology (KO) [BR:
plz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plz03019
]
S4054249_16345
Enzymes [BR:
plz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
S4054249_16345
Messenger RNA biogenesis [BR:
plz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
S4054249_16345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
ResIII
AAA_19
AAA_22
HA2_N
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
AOT10287
LinkDB
All DBs
Position
1:complement(3850341..3852776)
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AA seq
811 aa
AA seq
DB search
MLPIEAVFSELVDHLDTHETVLLQAPPGAGKSTWLPLNLMKSGQYQRIVMLEPRRLAARN
IAQYLAGQLNESLGQQVGLRIRQEVKVSEQTRLEIVTEGMLTRMIQQDPELSGIDLLIFD
EFHERSLAADTALAFALETQAALRDDLKILVMSATLDSERYQSFLQCPLIRSEGRGYPIA
HKYIPVKDESQWLMQIAPVIRQALKEESGSILVFLPGQKEIRYVANALQDALDSEPKVHL
AMLFGEQDKSAQQAAIAPAPNGERKIVLTTNVAETSLTIEGIRVVIDSGKRRAAVFNLKT
GVTELKTVSISRASAVQRAGRAGRIEPGVVYRLGSQALFERRDAHDKPDILSSDISGLIL
ESKVWGTQISDLPLLDMPSLAQCKQAEQLLLNLEAIDNQGKLMTLGKRMQQMGSEPRFAH
MLLKVQALETQLSGITLLACYFMALQDSRVKCAPELSLALNQLHHNAPQTFTKQLKYWCK
RADITHKTNEIALEHLAIVVALAYPDRLAKRRGNGFVLANGAGVNAHSEFWQDCDYLAIA
ELGGQQGQTIFSATEFHPTLLEAVLPYLFEQKTVCEFDQKQAQFLHQDRVYLGHWVFSAK
PSSAPLNEASRTQAWMSIVKEKGLSVFSAYDDVHQLLVRMQLAAQYFPDVFPASTEIDLV
SDLSPWLEPFLGEIKQYNQLKKLDLKSALLARIDWQKQQQLNSLLPERIQVPSGSQIRIQ
YQLEGPARLAVKMQEVYGMLQSPTLCEGRVDILMELLSPAQRPLQLTQDLAHFWQSSYKD
VQKEMKGRYPKHYWPDDPATAIATNKVKSRM
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
gtgctcccaattgaagctgttttttcagagttagtcgaccacctcgacacacatgaaact
gtgttattgcaagccccgccaggtgctggtaagtcgacttggctgcccctcaaccttatg
aagtcaggtcaatatcaacgtattgtgatgttggaaccccgtcgtttagctgcgcgtaat
attgcccaatatttagctggtcaactcaatgagtcactaggtcagcaagttggtctgaga
atacgccaagaagttaaggtatctgagcaaactcggttagaaattgttaccgagggaatg
ttgacgcgaatgatacaacaggacccagagctgagcggtattgatttgctgatttttgat
gagtttcacgaacgctcattggcggccgataccgctttggcatttgcgttagagacgcaa
gcagctctgagagatgatttgaaaattttggtgatgtcagccacgctcgatagcgaacgt
taccaatcatttttacaatgcccattgatacgttctgaaggacgaggctatccaattgca
cataaatatattccagttaaagatgaaagccagtggttgatgcaaatcgcccctgtgata
cgccaagctttaaaagaggaaagtggtagtatcttggtttttttgcccggtcaaaaagag
attcgctatgttgctaatgcattgcaagatgcactagatagcgagccaaaagtacattta
gcgatgttatttggtgaacaagataaaagcgcgcagcaagcagccattgcgccagcacca
aacggtgagcgtaaaattgtgcttacgacaaatgtggcagagacatctttaactattgaa
gggatccgagtagttatcgactctggaaagcgtcgcgcagccgtgttcaatttaaaaact
ggcgtcactgagcttaaaaccgtctctatttcaagagcatccgcagtacagcgagcgggt
cgtgctggacgaatcgagccaggtgtagtgtatcgtttaggtagccaagcattgtttgag
cgacgtgatgcacatgataagccggatattttgagttcagatattagtgggctgatttta
gagtccaaagtatgggggactcagatatctgatttaccattattggatatgccttcgctt
gcacagtgcaagcaagctgagcaattgctgttaaacttagaggctattgacaatcaaggc
aagctaatgacccttggtaagcgcatgcagcaaatgggcagtgagccaaggtttgcgcat
atgttgcttaaagtacaagcgctcgaaacacaactatcaggcatcactttattggcctgt
tactttatggcgctacaagatagccgtgtgaaatgcgcgccagaactcagtctcgcgctc
aatcaattgcaccacaatgcgccccaaacatttactaagcagttgaaatattggtgtaag
cgtgccgatataacacataagactaatgagatcgcacttgagcatttggccattgtggtg
gcgctcgcttatcctgataggttggcaaagcgacgtggcaatgggtttgttttagcaaat
ggtgcgggcgtcaacgctcacagtgagttttggcaagactgcgactatttggccattgca
gagttgggcggtcaacaaggtcaaaccatttttagtgcgactgaatttcatccgactttg
cttgaagcggttttaccttacttatttgagcaaaaaacggtctgtgaatttgaccaaaaa
caggcacaattcttacatcaagacagagtgtatttggggcattgggtattcagtgcaaag
ccgagctcggcaccattaaatgaggcatcaagaacgcaggcctggatgtccattgttaaa
gaaaagggcctaagcgttttttctgcttatgacgatgttcatcagctgcttgtgcgtatg
caattggctgcacagtattttccggatgtctttccagctagtactgaaattgatttagtg
tcggatttatcaccatggttagaaccatttttaggtgagataaaacaatataaccagctt
aaaaagttagatttgaaaagcgctttactggcgcgtatagactggcagaagcaacagcaa
ttaaatagtttattgccagagcgaattcaggtacccagtggttctcagatccgtatccaa
taccaattagagggccctgcgcgtttggccgtaaaaatgcaagaagtctacggtatgttg
caaagcccaaccctttgcgagggtagagttgatatattaatggagttgttatcacctgca
caaaggccgctgcagttgactcaagatctcgctcatttctggcaatcaagttataaagac
gtacaaaaagaaatgaaaggcaggtaccccaagcactattggcctgacgaccctgcgaca
gctattgccaccaataaagtaaaaagtcgtatgtaa
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