Pseudoalteromonas luteoviolacea: S4054249_21285
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Entry
S4054249_21285 CDS
T04577
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
plz
Pseudoalteromonas luteoviolacea
Pathway
plz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
S4054249_21285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plz03019
]
S4054249_21285
03400 DNA repair and recombination proteins [BR:
plz03400
]
S4054249_21285
Enzymes [BR:
plz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
S4054249_21285
Messenger RNA biogenesis [BR:
plz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
S4054249_21285
DNA repair and recombination proteins [BR:
plz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
S4054249_21285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
TniB
Cas3-like_C_2
Helicase_C_2
NADH_4Fe-4S
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AOT10408
LinkDB
All DBs
Position
2:121044..122984
Genome browser
AA seq
646 aa
AA seq
DB search
MYQADIHQTLEQYFGFSAFRAGQAQTIEQLIGGQSSLAIFPTGSGKSLCYQLTALHLPNL
TLVVSPLLALMQDQIEFLNKKGIPAASLDSTQTYEQSQSVMQGVRDGHIKILMVSVERFK
NERFRGFIKQVPISMLVVDEAHCISEWGHNFRPDYLKLPQIRNELNIPLVLLLTATATKK
VKRDMAHRFAIDEQHIVQTGFYRANLDLSIQACTEREKLPTILSFLSQTQDSGIIYVTLQ
QTAEEVAKQLQAAGQDAVAYHAGLKDDVRQQIQQQFMHNEKRIIVATIAFGMGIDKSDIR
FVIHYDLPKSIENYSQEIGRAGRDGQPSTCITLANLDGVSTLENFVYADTPELGNIESLL
NEIRTSMSQGLWEMQELSVSKATNIRLLALKTALVQLELFGVLEAKYAFYADFRFKWLHT
ENKVLNSFDANRQAFIQQIVSNTDFKKVWGTVDMAALVNQGVERGRVVAALDYLHEQGMI
LLESKRMMQVYQVDETALNAPELAKKLSDYFSDKELGEVKRIAAMLRFFELQNCLSNNLA
RYFDDQQVPQSCGHCSVCRGSSAQLQFSQEPLFPDDQQLRDDINGLKNYLTQAGIEATAA
VLVRFLTGMTTPMSTANKFRQRSGFGSCSALRYKQVEGKLSQLGLV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgtatcaagcagatatacaccagacgctagaacagtattttggatttagtgcgtttagg
gctggccaagcacaaaccattgagcaattaattggtggtcagtctagcttggccatattt
ccgactggttcggggaaatccttgtgctaccagcttacagctttgcatttacccaacctt
acgttagtggtttctccgctgcttgctttgatgcaagaccaaatcgagtttttgaacaaa
aaagggatccctgctgcaagtttagactcgacacaaacttatgagcaatcacagagcgtc
atgcaaggggtaagagatggtcacatcaaaattctaatggtctctgttgagcgttttaaa
aatgagcgttttcgggggttcataaagcaagtgccaatctcaatgttggtggtcgatgag
gcgcactgtatttcagagtggggtcataactttaggcctgattatttgaagttaccgcaa
attcgcaatgagcttaatattcctttggtcctgctattaacggcaaccgcaactaaaaaa
gtaaaacgagatatggcgcatcgattcgccatagacgaacagcatattgtgcaaacgggg
ttttatcgcgccaatttagatttgagtattcaggcctgcaccgagagagagaagctgccg
acgattttgtcgtttttaagccagacacaggacagcggtattatttatgtcacgttgcag
caaacggcagaagaagttgcaaaacagctacaagcagcagggcaagacgcagttgcctac
catgcaggattaaaagatgacgtaaggcagcagatccaacagcaatttatgcacaatgaa
aaacgtatcatcgtagccaccatcgcgtttggtatggggattgataagtcagacattcgc
tttgttattcattatgatttacctaagtctattgaaaactatagccaagaaattggccgt
gcaggacgagatggacagccctcaacctgcatcacactggcaaatttagacggggtttca
acccttgagaactttgtgtatgcagacacaccagagcttggcaatattgaatcactgctt
aatgaaattcgcacgtcaatgtcgcaagggctttgggaaatgcaagagctgagtgtgtct
aaggcgacaaacattcgcctgctcgcgctaaaaacggcgctcgtacaactggagttgttt
ggtgtgctcgaagccaaatacgcattctatgctgactttcgctttaaatggctgcacaca
gaaaacaaagtgctgaactccttcgacgcaaatcgccaagcgtttattcagcagatcgtg
tcaaataccgactttaaaaaagtgtgggggacggttgatatggccgctttggtcaatcaa
ggggtggagcgcggccgcgttgtggctgcattggattatttgcatgagcagggcatgatc
ttgcttgaatctaagcgcatgatgcaagtctaccaagtggatgagactgctttgaacgcc
ccggagctcgctaaaaaattaagtgattatttttctgataaagagcttggggaagtaaag
cgtatcgcagccatgttgcgcttttttgagttgcaaaactgtttgtctaataatctcgcc
agatactttgatgatcagcaagtaccacaaagctgcgggcattgcagtgtttgtcgagga
agctctgcgcaactgcaatttagtcaagagccgctttttccagatgatcagcaattgaga
gacgacatcaatgggttgaaaaattacctcactcaggctggtattgaagcgacagccgca
gtactggtgcgttttttaactggcatgacaacgccgatgtcgacggccaataagtttagg
caaagatctggttttggtagttgcagcgctttgagatataagcaggttgaaggcaagctt
tctcaacttgggctggtttag
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