Paenibacillus sp. lzh-N1: C0638_00910
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Entry
C0638_00910 CDS
T10344
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
plzh Paenibacillus sp. lzh-N1
Pathway
plzh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plzh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C0638_00910 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plzh03019
]
C0638_00910 (recQ)
03400 DNA repair and recombination proteins [BR:
plzh03400
]
C0638_00910 (recQ)
Enzymes [BR:
plzh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C0638_00910 (recQ)
Messenger RNA biogenesis [BR:
plzh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C0638_00910 (recQ)
DNA repair and recombination proteins [BR:
plzh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C0638_00910 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AUO05226
LinkDB
All DBs
Position
complement(184494..186392)
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AA seq
632 aa
AA seq
DB search
MSVQAPTLERAQDLLQKFYGYPDFREGQKKIVASMLEGNDTLGIMPTGGGKSICYQIPAL
LHEGLTIVVSPLISLMKDQVDALTTMGIAAAYINSTLSGREVNDRIRAARNGDLKLLYVA
PERLELDWFRDEMAQLPISCVAVDEAHCVSQWGHDFRTSYLAVAPFVDGLYERPIVAAFT
ATATPQVMDDIVRLLRLRSPETFVTGLGRPNLAFSVLRGEDKRSFLLNYAREHEGESGII
YAATRKDVDDLYQRLCDAGMAAGRYHAGMTDQERADSQEGFLYDDIRVIVATNAFGMGID
KSNVRYVIHYNMPKNMEAYVQEAGRAGRDGDPSQCILLFGPQDIVTQKFLIEQNPQDEDR
KRNDYRKLQQMVDYCYTTRCLRSAQLEYFGEAQEHEACGICSSCTDERELVDMTIDAQKI
FSCIHRMRERYGVSMVASVLKGSRNKKVLQYGFDSLPTYGVMGNRTEKEIAEIINVLVSE
GYLMLSEGQYPVVRLQQLAAEVLRGQREVMQRVVRHATAFAGGAGSRGRKGRDTYPAAVN
ETVFEQLRLIRRDLAAQEHVPSYIIFNDATLREMSVASPQSEADMLRIKGVGEVKFRKYG
KPFLDFFQNEGNTGGMVSEDEIFADDVYEDFE
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtacaagcaccaacattggaacgggcgcaggacttgctgcaaaaattttatggc
tatcccgatttccgggagggacaaaagaaaattgtggccagtatgctggaaggcaacgac
actttgggcatcatgccaacaggtggcggaaaatcgatatgctaccagattcccgcgttg
ttgcatgaggggctgaccattgttgtgtcaccactgatctcgttaatgaaagaccaggtg
gatgcgctgaccacgatggggattgcagctgcctacattaatagcacgttgagcggtcga
gaagtcaacgaccgtatacgcgccgcacggaacggagatttgaagttgctgtatgtcgcc
cctgaacggctggaattggattggttccgtgatgagatggctcagttaccgatttcctgc
gttgcggtagatgaggctcactgtgtatcccagtggggtcatgattttcgtaccagctat
ctggcggtggctccattcgtggacgggctgtatgaacgtccaatcgtagctgcgtttacg
gcaacggctacaccgcaggttatggatgatatcgtacgcctgcttcgtctgcgttcaccg
gaaacgttcgttacaggtcttggaaggccgaatttggcattcagtgtgctgcgtggggag
gacaaacgtagctttttgctaaattatgcccgtgaacatgagggtgaatcgggcattatt
tatgcggcgacacgtaaggacgtggatgatttatatcaacgcctgtgcgacgctggcatg
gcagcaggacgttatcatgcaggaatgactgatcaggaacgtgcagacagccaggaaggg
tttctttacgacgatatccgtgttattgtcgcaaccaatgccttcggtatggggatagat
aaatcaaacgtacgttatgtcattcattacaatatgcctaaaaatatggaggcgtatgta
caagaagcaggacgcgcaggacgtgatggtgacccaagtcaatgtattttgctgttcgga
ccgcaagatattgtgacccagaagttcctgattgagcaaaatccacaggatgaagaccgc
aagcgcaacgactaccgtaagctccaacagatggttgactattgctacacgactcgctgc
ctacgttcagcacagctggagtatttcggagaagcgcaggagcatgaagcctgcggcata
tgcagttcatgtacagatgagcgggaactggtggatatgaccatagatgcgcaaaagatt
ttttcgtgcatacatcgtatgcgggaacggtatggggtttcaatggtagcctcggtgttg
aaaggctcgcgcaacaaaaaggtgctgcagtatggttttgacagcctgccaacctatggt
gtgatgggcaaccgaacggaaaaagaaattgctgaaattatcaatgttcttgtttcggaa
ggctatctgatgctatccgaggggcaatatccggtcgtacgcttgcagcagcttgctgct
gaagtgctgagaggccagcgcgaagttatgcagcgtgtggtccggcatgccactgctttt
gcaggtggagcgggatcacgtggacgaaaggggcgcgatacctatcctgccgcagtcaac
gaaactgtgttcgagcaattgcgcctgatccgccgtgatctggccgctcaggagcatgta
ccgtcttatatcatcttcaatgatgccacgctgcgagagatgagcgtagcgagtccgcaa
tccgaggcagacatgttgcggatcaagggtgttggtgaagtgaagttccgcaagtatggc
aagccgtttcttgatttctttcaaaatgaggggaataccggcggaatggtgagcgaggat
gagatctttgcagatgatgtgtacgaggattttgaatag
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