Paenibacillus sp. lzh-N1: C0638_03270
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Entry
C0638_03270 CDS
T10344
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
plzh Paenibacillus sp. lzh-N1
Brite
KEGG Orthology (KO) [BR:
plzh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
plzh03016
]
C0638_03270
Enzymes [BR:
plzh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
C0638_03270
Transfer RNA biogenesis [BR:
plzh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
C0638_03270
Prokaryotic type
tRNA splicing ligases
C0638_03270
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AUO05658
LinkDB
All DBs
Position
complement(732511..733737)
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AA seq
408 aa
AA seq
DB search
MAYQEINGVRVWGAPDPGALSQARTCAENGNVIQALLMADHHKGYSQPIGGVMVYDGQIS
PSGVGYDIGCGNKAVRTKLSAADIMPRISTVMDEIARQISFGVGRVNEIQVDHELFDDPD
WAVYAAIGKQEHDKLKSLAREQLGTVGSGNHFVDVFVEEATGQVWIANHFGSRGFGHKTA
SGFLNLAAGREFLGKAPGEHMDQPPVLLDMNSELGDMYYRAMRLAGRYAYAGRDHVIEQV
LGIMGTEADFTVHNHHNYAWKEQHDGRDTIVVRKGATPSAPGQMGFIGGSMGDISVIVRG
KDSVENRDSYYSTVHGAGRIMSRTQAAGKMNWKTRTRSGGQITDLQMKEAVRNYGVELRG
AGTDESPFVYRKLREVLDAHSETVEVMHVLKPIGVCMAGANEFDPYKD
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggcttatcaagaaatcaatggagtacgcgtatggggagcacctgatccgggggcatta
tctcaagcccgcacatgtgccgaaaatggtaatgtgattcaggcgctactgatggcagat
catcataaaggctacagtcagcccattggcggtgtgatggtgtatgacggacaaatttca
ccttcaggtgtagggtatgatatcggctgcggaaataaggcggtaagaaccaagctgtct
gccgcagacattatgccgcgtatttcaaccgtgatggatgagattgcacgtcagatttca
tttggcgtaggtcgtgtgaatgagattcaggtggaccatgagctgtttgatgacccggat
tgggcggtatatgcagcgattgggaagcaagagcatgacaaactgaagtccttggcgaga
gaacagctgggtacagtaggaagtggcaatcattttgttgatgtatttgtagaggaagcg
acaggacaggtctggattgccaatcatttcggcagccggggctttgggcataaaacagca
agcgggtttctaaatttggccgcaggacgggagtttctcggaaaggcgccgggagaacat
atggatcagccgcctgtactactggatatgaacagtgagctgggggatatgtactatcgt
gcaatgcgccttgccggacgttatgcttatgcaggacgtgaccatgtgatagaacaagtg
cttggtattatggggaccgaagcggactttacggtgcataatcaccataattacgcgtgg
aaagaacagcatgatggacgcgacaccattgtggtccgcaaaggcgcaaccccctcggcc
cctggtcaaatgggctttattggaggaagcatgggggatatctcggtgattgtgcgtggg
aaagattcggtagaaaatcgggattcctactatagcacagtccatggcgcaggtcgtatt
atgagtcgtacccaggcagccggtaaaatgaattggaaaacccgtacgcgtagcggaggg
cagattacggacctacagatgaaggaggctgttcgaaactacggtgtcgagctgcgcgga
gcaggtacagacgaaagcccgttcgtctaccgcaaactgcgtgaggtgctggacgctcat
tccgagactgttgaagttatgcatgtgctgaagccaatcggggtatgcatggctggggcc
aatgagtttgacccatataaggattaa
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