Paenibacillus sp. lzh-N1: C0638_03445
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Entry
C0638_03445 CDS
T10344
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
plzh Paenibacillus sp. lzh-N1
Brite
KEGG Orthology (KO) [BR:
plzh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
plzh03009
]
C0638_03445
Enzymes [BR:
plzh01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
C0638_03445
Ribosome biogenesis [BR:
plzh03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
C0638_03445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
MTS
Methyltransf_25
Methyltransf_15
PrmA
TRM5-TYW2_MTfase
Cons_hypoth95
Methyltransf_11
RrnaAD
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
AUO05692
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Position
complement(772733..774490)
Genome browser
AA seq
585 aa
AA seq
DB search
MTNNRSGRGKSRRNTATATPVPGKQHNKTMQAKKDRELEQSPVGAGNRMLRAGTENKNGN
MDDFPRKKGENERKPRRFSKNERSNDGRSQEASNRKRSSAERSDLPVQKNDEAVIDIIGM
NHDGEGVGRVEGFTLFVPGALPGEKVRVKVLKTKKQYGYAKLLDIAQASPDRIAAPCAIY
DQCGGCQLQHMSYEAQLGWKRQHVVDVLERIGKLSVTTESSERTAEVLADSADGNADHMS
RVQGVVVHPTLGMSEPWRYRNKAQVPIGVAEGGLVGGFYARGSHRIVDMNTCLIQDERND
EVVARVKEIGRMLGISAYNEETGRGLLRHVVVKTAFRTGEMMLVLVTNGRDIPHADAWIG
SIREHIPHVASICQNVNTKRTNVIFGDETRVLWGRDVIYDYIGNVQFAISARSFYQVNPV
QTEVLYSKTVEYAGLTGKETVIDAYCGIGTISLFLAQHADQVYGVEIVKEAIDDARSNAL
LNEMRNVKFEVGASEDVIPAWKEQGITADVIVVDPPRKGCDPRLLDTILEMKPERVVYVS
CNPSTLARDLRILEDGGYSTVEVQPVDMFPHTVHVESVALLVRKD
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgacaaataaccgtagcggacgtggaaaaagccgccggaatacagcaacagcaactcca
gttccaggaaagcagcacaacaagaccatgcaggcgaaaaaagacagagaactggaacag
tcaccagttggagctgggaatagaatgcttcgggctggaaccgaaaataaaaatggaaat
atggacgattttcctcggaaaaaaggggagaatgaacgaaaacctcgtcgtttttccaaa
aatgaacggagtaacgacggacggagtcaggaagcttccaatcgtaaacggtctagtgca
gagcgtagcgatctgcctgtgcaaaagaacgatgaggccgtgatagacatcatcggcatg
aaccatgatggcgagggtgtagggcgtgtcgaagggtttacgctgtttgttccaggcgcg
ttaccgggtgaaaaggtacgggtcaaggtgctgaaaacgaaaaagcagtacggctatgcc
aagctgctggatattgcgcaggctagccccgaccgaattgcagctccgtgtgccatctat
gatcaatgcggcggttgtcagctccagcatatgagctacgaagcgcagctgggctggaag
cggcaacatgtggtggatgtgctggagcgtataggaaagctgagtgtgactacggagtcc
agtgagcgtactgcagaggttttggctgactctgcggatggaaatgcagaccacatgtcg
cgtgtacaaggcgtagttgtgcatcctacactcggtatgagtgagccgtggcggtaccgc
aacaaagcacaggtgccgattggtgtcgccgagggcgggcttgtcggcggtttctacgca
cgtggcagccatcgcatcgtggatatgaatacctgtctcattcaggacgagcgcaacgat
gaagttgtcgcacgggtcaaagagattggccgaatgctgggcatcagtgcatataatgaa
gaaaccgggcgcgggctgttgcgccatgtcgttgtgaagaccgcttttcgcacaggtgaa
atgatgctggtcctcgtcacaaatgggcgagatattccgcacgcagatgcgtggatcggc
agtattcgtgagcatatcccacacgtggcaagcatatgccagaacgtgaacacgaagcga
acgaacgttatttttggcgacgagactcgtgtactgtgggggcgtgacgtgatctacgat
tacattggaaacgtccagtttgcgatttccgcgcgatccttttatcaggtgaatcccgta
caaacggaagtgctgtatagcaaaaccgtcgaatatgccgggctcacaggcaaagaaacg
gtaatcgatgcgtattgtggcatcggcacgatttctttgttcctcgctcagcatgcggac
caggtgtatggggtcgaaattgtcaaagaagccatcgacgatgcacggagtaatgcgctg
ttgaacgaaatgcgtaatgtgaaatttgaggtaggcgcgtccgaggacgtcattcccgca
tggaaagagcaaggcatcaccgccgacgttatcgtcgtcgatccgccccgcaagggctgc
gatccacgcctgctcgacaccattctggagatgaagccagagcgtgtagtgtatgtatcc
tgtaatccaagcacactggcgcgggatttaaggatattggaggatggcgggtatagtaca
gtggaagtacagcctgtagatatgtttccgcatacggttcatgtggagagtgttgcgctg
ttggtcagaaaagactaa
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