Paenibacillus sp. lzh-N1: C0638_22885
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Entry
C0638_22885 CDS
T10344
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
plzh Paenibacillus sp. lzh-N1
Pathway
plzh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plzh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C0638_22885 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plzh03019
]
C0638_22885 (rny)
Messenger RNA biogenesis [BR:
plzh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C0638_22885 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_KhpA-B
HDOD
KH_2
Motif
Other DBs
NCBI-ProteinID:
AUO09168
LinkDB
All DBs
Position
complement(5194850..5196394)
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AA seq
514 aa
AA seq
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MMTAIWFVLVAVAALFFGFGIGYFIRKSIAEAKISSAEEAAAQIVENAKKEAEALKKETV
LEAKDEIHRIRAEAEKETRERRNEIQRQERRLLQKEESLDKKLESLERKEEQVANKEKRI
DETQQQIDLIYKSQVTELERISNLTMEDARSIILTNVEQEVRHETAQMIKEIEQQAKEEA
DKKSREIITLAIQRCAADHVAETTVSVVTLPNEEMKGRIIGREGRNIRALETLTGIDLII
DDTPEAVILSGFDPIRREIARTALEKLVADGRIHPARIEEMVEKSRKEVDERIREYGEQA
TFEVGVHSLHPDLIKILGRLKFRTSYGQNVLKHSMEVAYLTGLMAGELGEDVVLARRAGL
LHDIGKALDHEVEGSHVEIGVELAKKYKEHPVVINSIASHHGDCEATSVIAMLVGAADAL
SAARPGARRETLETYIRRLEKLERISESFEGVEKSYAIQAGREVRVMVQPEKIDDAEAFR
LARDITKTIENELDYPGHIKVTVIRETRAVEYAK
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgatgactgcgatctggttcgttctcgttgctgtagccgcgttattctttgggttcggg
attggttattttattcgcaaatctattgcagaagctaagatctccagtgcggaagaggct
gccgcgcaaatcgtggagaacgcgaaaaaagaggcagaagcgctgaagaaggaaacggta
ttggaagcgaaggatgaaattcaccgcatccgtgccgaagctgaaaaagaaactcgtgaa
cgtcgtaatgaaattcaacgacaggaacgaagattgctgcaaaaagaagaatcgctggat
aaaaaattggaatcgctggaacgcaaagaagaacaagtggccaacaaagagaaacgaatc
gatgaaacccagcagcaaattgatttgatttacaagagccaggtaactgagttggagcgt
atttctaatcttacgatggaggatgcaagaagtattattctgaccaacgtagagcaggaa
gttcgtcatgaaacagctcagatgattaaggaaattgaacagcaggccaaagaagaagcg
gataaaaagtctcgtgaaatcatcacactggccatccaacgctgtgcggcagatcatgta
gcagaaacgacggtttctgttgtgacattgccgaatgaagaaatgaaaggccggattatc
ggacgcgaaggccgtaacatccgtgcacttgaaacccttacaggaatcgacctcattatt
gatgatacgccggaagctgttatattgtccggatttgatccgattcgtagagagattgcg
cgtactgcactcgagaagctggtagcggacggacggatacatccggctcgtattgaagag
atggtggaaaaatctcgtaaagaggtggacgaacgaatccgtgagtatggtgaacaggcc
acctttgaagtgggtgtgcatagcttgcatccggatttgatcaagatcttgggacgtctt
aagttccgtacgagttatggacagaacgtattgaagcactcgatggaagttgcatacttg
acaggtctgatggccggggaactgggcgaagacgttgtactggcaagacgagcaggttta
ctgcatgacatcgggaaggcgctggatcacgaagtggaaggatcacacgttgaaattggc
gtggagctggcgaagaagtacaaggaacacccggtcgttatcaacagcattgcttcacat
cacggcgactgcgaagcgacttcagtgatcgccatgctggttggagcggcagatgccctg
tcagcagcaagaccaggagcacggcgtgaaacgctagagacgtacatccgtcgtcttgag
aagctcgaacgcatctccgaatcttttgaaggcgttgaaaaatcatacgcaattcaagct
ggacgcgaagttcgtgtcatggtacagccagagaaaattgatgatgcggaggcattccga
ctggctcgcgatattacgaaaacgattgagaatgaactggattatccaggacatattaag
gttaccgttattcgcgagacccgtgcggtagaatacgcaaaataa
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