Paenibacillus sp. lzh-N1: C0638_23010
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Entry
C0638_23010 CDS
T10344
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
plzh Paenibacillus sp. lzh-N1
Pathway
plzh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plzh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C0638_23010 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plzh03019
]
C0638_23010 (pnp)
03016 Transfer RNA biogenesis [BR:
plzh03016
]
C0638_23010 (pnp)
Enzymes [BR:
plzh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
C0638_23010 (pnp)
Messenger RNA biogenesis [BR:
plzh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C0638_23010 (pnp)
Transfer RNA biogenesis [BR:
plzh03016
]
Prokaryotic type
tRNA degradation factors
C0638_23010 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
SPATA25
S1_RRP5
S1_2
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
AUO09192
LinkDB
All DBs
Position
complement(5223239..5225341)
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AA seq
700 aa
AA seq
DB search
MEQRVEMQLGGRKLVLETGRLAKQANAAVKVSYGETVVLCTVTASREPKDLDFFPLTVNY
EERLYAVGKIPGGFIKREGRPSQKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQD
CEPEIAAMIGTSAALSISDVPFNGPIGGVAVGRVNGQFVINPDIAQQNASDLYLVVAGTK
DAIMMVEAEGDEIPEEVMLEAIMFGHDEIKNIVAVIEQLVQVAGKEKMQVKLHAVDEKVN
SEVRAYAADRLVEAVKIAEKHARQEAIDAVNEETVAHFEAQYIETPELLSDVSEVLYDIV
KEEVRRLITHDKVRPDGRKLDEIRPIESDTSILPRTHGSGLFTRGQTQALSVCTLGALGD
VQILDGIDLEETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEF
PYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVSVLTDI
QGMEDHLGDMDFKVAGTAEGVTAIQMDIKIDGIDRNILQDALKQAREGRLFILGKMMEAI
QKPREQLSPYAPKIMTMHINPDKIRDVIGAGGKIINKIIEETGVKIDIEQDGRVFIASTN
QEMNEKARSIIEGIVKEVVVGEIYIGTVKRIEKFGAFVEILPGKDGLVHISQLSTERVAK
VEDVIAIGDTITVKVTEIDQQGRVNLSRKAVLTAEAPAKS
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggagcaacgcgtagaaatgcaactcggcggaagaaagctggtgcttgaaacaggacgt
cttgcaaaacaagccaatgcggcagttaaggtgagttacggagaaacagttgtgctgtgt
actgtgaccgcttcccgtgaaccgaaagatttggacttttttccgctgaccgtgaactat
gaggaaagattgtatgctgtggggaaaattcctggcggatttattaagcgtgaaggacgc
ccgagtcaaaaggcgattttatccagtcgtttgacagaccgtccaattcgcccattgttt
cctgaaggtttccgcaatgatgtgcaggtgttaaacctagtcatgagtgttgatcaggat
tgcgaaccagaaattgcagccatgattggaacctcagcagcactcagtatttcggatgtt
ccttttaacggtccaattggcggagttgctgtaggtcgtgtaaacggacaatttgtgatt
aatccagatattgcacagcaaaacgcaagcgatctgtatctcgttgtagctggaacaaaa
gatgccattatgatggtagaagcagaaggcgatgagattccagaggaagttatgctcgaa
gctattatgttcggacatgatgagattaagaacattgtggcagttattgaacaattggtg
caagtagcaggtaaagaaaaaatgcaggttaagctgcatgctgttgatgaaaaagtgaac
agtgaagtacgtgcttatgcagctgatcgtttggtggaagctgttaaaattgcagaaaaa
catgcccgtcaagaggcgattgatgcagttaatgaagagaccgttgcccattttgaagca
caatacatagagacacctgagcttttgagtgatgtgagcgaagttctctatgatatcgtt
aaggaagaagtccgtcgtctgattacgcatgataaagtacgccctgatggtcgtaagctt
gacgaaattcgtccaattgaaagcgacactagcattttgccgcgtacgcacggttcaggc
ttgtttacacgtgggcaaacgcaggcgcttagcgtttgtactcttggtgcactaggggat
gtacaaattctggacggtattgatctggaagaaaccaaacgcttcatgcatcattacaat
ttccctccattcagcgtaggtgaggctcgtccattgcgcgcgccgggtcgtcgtgaaatc
ggacatggtgctcttggtgagcgtgcgctttccaaagtaattccttccgaaactgaattt
ccgtacacgatccgtctggtttccgaagtgctggaatcgaatggatcgacctcacaagct
agtatttgtgcaagcacactggccatgatggatgcaggtgtaccgattaaagctccagtt
gcaggcgtagctatgggattgatcaaggatggagatcatgtttccgtactgacggatatt
cagggtatggaagatcatctgggcgatatggactttaaagttgctggtactgcggaaggc
gtaactgccattcaaatggatattaaaattgacggtattgaccgcaatattttacaggat
gcgctcaagcaagccagagaaggacgtttgttcattcttggaaaaatgatggaagcgatc
cagaaaccacgtgagcaattgtctccgtatgctccaaaaattatgacaatgcacattaac
ccggacaaaatccgtgatgttattggagctggtggtaaaatcatcaacaagatcatcgaa
gaaaccggcgtgaaaatcgatattgaacaagatggtcgtgtgttcatcgcttctacaaat
caagagatgaatgagaaggcgcgttccattattgaaggtatcgtaaaagaagtcgtggtc
ggcgagatttacatcggtacagtcaaacgaattgaaaaattcggcgcatttgttgaaatt
ttaccgggtaaagatggtctggttcatatttctcaactgtctactgagcgtgtagccaaa
gttgaagatgtcattgctattggtgatacgattacagtgaaagtaactgaaatcgatcag
caaggtcgtgtcaatttgtcccgtaaggcagtactgacggctgaagctcctgctaagtcc
tag
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