Paenibacillus sp. lzh-N1: C0638_23145
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Entry
C0638_23145 CDS
T10344
Name
(GenBank) FliA/WhiG family RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
plzh Paenibacillus sp. lzh-N1
Pathway
plzh02020
Two-component system
plzh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
plzh00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
C0638_23145
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
C0638_23145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plzh03021
]
C0638_23145
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
plzh02035
]
C0638_23145
Transcription machinery [BR:
plzh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C0638_23145
Bacterial motility proteins [BR:
plzh02035
]
Flagellar system
Flagellar assembly proteins
Stator
C0638_23145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
UPF0122
PhyR_sigma-like
HTH_38
HTH_23
Sigma70_ECF
CtpB_N-like
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
AUO09218
LinkDB
All DBs
Position
complement(5252424..5253212)
Genome browser
AA seq
262 aa
AA seq
DB search
MNERKAAHLNHSDLWEQWKEHGDKEAKKQLIEKYLHIVEYVSGRLAVGLPKNVSKDDLAS
NGVMGLIDALEKFDYERGLQFETYASWRVRGAILDGLRQGDWVPRSVREKAKKIEDAYQH
LEQRYLRTVSDEEMSHYLDVSEKEFQSMIQEVAVMSIVSLEDPIREEESETRLSLLVDEK
AKNPDHKVNEFTLRDALAQGIDKLTEKERIVVSLLYYEDLSLSEIAEVMSLSPSRISQLH
SKAILRLRATLDKQRDLLMRKD
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagcgaaaagccgctcatttgaaccattccgacctgtgggagcaatggaaagaa
cacggtgacaaggaagcgaagaaacagttaattgaaaagtatcttcatattgtggagtat
gtgtcgggccgtcttgcagtaggcttacctaaaaatgtatccaaggatgatctggcgagc
aacggtgttatgggtttgattgatgctttagagaaatttgattatgagcgtggtttgcag
tttgagacttatgcttcttggcgtgttcgtggagcaattttggatggccttcgtcaagga
gattgggttcctcgttcagttagggaaaaagcgaaaaaaatcgaagacgcctaccaacat
ctagaacaaagatatttacgcacagtaagcgacgaagagatgagtcattatttggacgtc
tccgagaaagagtttcaaagtatgatccaggaggtcgccgtgatgtcgattgtttcactg
gaggacccgatccgcgaagaagagtcggaaacacggctttccctgttggtggacgaaaag
gcgaaaaatccggaccataaggtcaatgaattcacacttcgtgatgccttggcacaaggc
attgataaattaactgaaaaagagcgtatcgttgtttctttattgtattacgaggatctg
tcactcagcgaaattgctgaggtcatgtcactttctccttcgcgaatttctcagttgcat
tccaaagcaatattacgtctgagagcgacactggacaaacaacgggatttgctaatgcgt
aaagattaa
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