Prochlorococcus marinus subsp. marinus CCMP1375: Pro_1094
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Entry
Pro_1094 CDS
T00137
Symbol
srmB
Name
(RefSeq) Superfamily II DNA/RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pma
Prochlorococcus marinus subsp. marinus CCMP1375
Pathway
pma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pro_1094 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pma03019
]
Pro_1094 (srmB)
03009 Ribosome biogenesis [BR:
pma03009
]
Pro_1094 (srmB)
Enzymes [BR:
pma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pro_1094 (srmB)
Messenger RNA biogenesis [BR:
pma03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pro_1094 (srmB)
Ribosome biogenesis [BR:
pma03009
]
Prokaryotic type
rRNA helicases
Pro_1094 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
AAA_22
DUF6702
UvrD-helicase
AAA_19
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
1462476
NCBI-ProteinID:
NP_875486
UniProt:
Q7VBJ8
LinkDB
All DBs
Position
1020284..1022095
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AA seq
603 aa
AA seq
DB search
MAKTKSNEDISTSNVSSNSDPSISIESETEEHISITEVDASQLENVEKASNGFEGFGFSE
ALLKTLKNKGYEEPTPIQKASIPELMLGRDLLGQAQTGTGKTAAFALPLLERINSKERNP
QVLVLTPTRELAMQVAESFKAYSEGHANINILAVYGGSDFRSQIYSLKRGVEIIVGTPGR
VMDHIRQGTLNQDSLQCLVLDEADEMLRMGFIDDIEWILEQLPNERQMVLFSATMPPEIR
KLSKRYLRDPAEITIKAKKKEAQLIRQHYITVQNSYKLEVLRRVLELNYGEGVIIFARTK
AITLKLAESLEASNHNVAVLNGDVPQNLRERTVERLRQGGINILVATDVAARGLDVERIG
LVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFISPRERSYLNNLERAVGQSIERMEIPN
NESINNHRIQKIKRDLLTTASQKRKDQEETNLIKEVINEIESELEITPKEIALAAINLSI
GESPLLINTDESWINQAERFRKSNDRRDNRGRSRRRNDLDIGTTEKDKERFRVDVGHRDR
VKPGNIVGAIANESGLNGRMIGRIQIFESYSLVDLPKGMPTKIFQSLKRVKVMNKELNIN
RYT
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaacgaagtccaacgaagacataagtacttctaatgtttcttcaaattcagat
ccatctatctctattgaaagtgaaactgaagaacatatttccataacagaagttgatgct
tctcagcttgaaaatgtagagaaggcaagtaatggtttcgaaggtttcggttttagtgaa
gccttactaaaaacccttaagaacaaagggtatgaagagcctacaccaattcaaaaagct
tctatcccagaattaatgctggggagagatctgcttggacaagctcaaactggtacaggt
aaaacagcagcatttgctctacctttacttgaaagaataaatagcaaagagcgtaaccca
caagtacttgtcttaacacctactcgtgaacttgcaatgcaagttgcagagtcctttaaa
gcatactcagaaggtcatgcaaatataaatattttagctgtatatggaggatctgatttt
cgatcacaaatatattccttaaaaagaggtgttgaaatcatagttggaactccaggacga
gtaatggaccatatacgccaagggacattaaatcaagattctctccagtgcctagtcctg
gatgaagctgatgagatgttgcgtatgggctttatagatgatatcgaatggatacttgag
caattaccgaatgagcgtcaaatggtcctcttctctgccacaatgcctccggagataaga
aaactttcaaaaagataccttagagatcccgctgaaataaccattaaggcgaaaaagaaa
gaagctcaactaattagacagcattatataactgttcagaatagctataagctagaagta
ttgagacgtgttcttgaacttaactatggtgaaggagttataatatttgcaagaacaaaa
gctattacactaaagctggcagaaagcctggaagcatcaaaccacaatgtggctgtgcta
aatggagatgttcctcaaaatctaagagagagaactgtcgaaagattacgccaaggcggc
ataaatattcttgttgcaactgacgttgccgctaggggattagatgtagagcgcatagga
ctagtgattaattacgatatgccctttgattctgaagcatatgttcatcggataggtaga
actggtagagctgggcgcagcggtgaagcaatcctttttatcagtccaagagaaaggtcc
tacctaaacaatctagaaagagctgttggacaaagtattgagcggatggaaatacctaat
aatgaaagtataaataaccatagaatacaaaaaatcaagagagatcttctaacaaccgct
tctcaaaagcgaaaagatcaagaggaaacaaacctgatcaaagaagttataaatgaaata
gagagtgaactggaaatcactcctaaagaaattgctttagctgcaataaacctgtctata
ggtgaatcaccgttattaattaatactgatgaaagctggatcaaccaagcagaaaggttt
cgtaaaagcaatgatcgacgtgataatcgtggaagaagtcgtcgtagaaatgatttagat
atagggactacagaaaaagacaaagagcgttttagagtagatgttggtcatcgagacaga
gtaaagccagggaacatagttggtgcaatagctaacgaatcaggtttaaatggtcgaatg
atcggaaggatacagatttttgaaagttatagcttggtcgatctacccaaagggatgcca
actaaaatttttcaaagtctcaaaagagtaaaagttatgaataaagagttaaatatcaac
cgttatacataa
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