Pseudoalteromonas marina: CPA52_00725
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Entry
CPA52_00725 CDS
T06578
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pmaa
Pseudoalteromonas marina
Pathway
pmaa03420
Nucleotide excision repair
pmaa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CPA52_00725
03430 Mismatch repair
CPA52_00725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmaa03400
]
CPA52_00725
Enzymes [BR:
pmaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CPA52_00725
DNA repair and recombination proteins [BR:
pmaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CPA52_00725
MMR (mismatch excision repair)
Other MMR factors
CPA52_00725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
DUF3553
SAP18
Motif
Other DBs
NCBI-ProteinID:
ATG56851
LinkDB
All DBs
Position
complement(172838..175003)
Genome browser
AA seq
721 aa
AA seq
DB search
MDVSELLDGLNDKQRDAVAAPLQNMLVLAGAGSGKTRVLVHRIAWLMQVEQASAYSIFAV
TFTNKAAKEMRTRVEETLKAPVGGMWIGTFHGLSHRILRAHHREANLPEAFQILDSDDQL
RMIKRLLKSMNIDDKKWPAKQFGWYISAKKDEALRPKDIQAYDINEQMMLRVYAAYQEAC
DRAGLVDFAEILLRSYEVLKNNPTLLRHYQQRFAHMLVDEFQDTNTIQYAWLKLLAGDTS
SIMIVGDDDQSIYGWRGAKIENIKRFLTDFDAETIRLEQNYRSTATILKASNALIKNNSE
RMGKSLWTDGNEGEPISIYAAFNELDEARFVSSKLRSWLNAGNALQDAAILYRSNAQSRV
LEEAMLQEGLKYRIYGGMRFFERQEIKDALSYLRLVGNRQDDAAFERVINTPARGIGDKT
LSHIRDCARAESLPLWYAAKAIVEQQHLSGRAAGAVTKFVELVEHIEDKISDLTLQEQAK
YTIQTSGLMAMYQAEKGEKGRARVENLEELISACDQYELPEEEEFSSPLQGFLAYTSLES
GEGQADEHEDAVQMMTLHSAKGLEFPLVFMVGVEEGMFPSQQSNEESGRLEEERRLCYVG
MTRAMDKLYISHAESRRLYGQEKYHSPSRFLREIPEDCVEEIRIKTQVSRPPAAGRFSAS
VSHAAFEDSGFNLGQRVLHAKFGIGTVLNYEGSGAQSRVQVNFDDLGSKWLVTAYARLQA
V
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcagaattactcgacggcttaaatgacaaacaacgcgatgccgttgcagcc
ccattacaaaacatgctggtattggccggtgctgggtctggtaaaacacgagtgttagtt
catcgtatcgcgtggcttatgcaagttgaacaagcatcagcttatagtatttttgcggta
acttttaccaataaagcagctaaagaaatgcgtacccgcgttgaagaaaccttaaaagca
ccggttggcgggatgtggattggtactttccatggcttatcacaccgtattctacgtgct
catcaccgtgaagctaacttaccagaagcctttcaaattttagattctgatgaccaactt
cgtatgatcaagcgcttattaaaatcaatgaatattgatgataaaaagtggcctgcaaaa
cagtttggttggtacataagcgctaaaaaagacgaagcacttcgccctaaagatattcaa
gcttatgatataaacgagcaaatgatgctgcgtgtatatgccgcctaccaggaagcgtgt
gacagggctggtttggtcgattttgctgaaatactgctacgcagctatgaagtattaaaa
aataacccgacgttacttcgccactaccaacagcgctttgcccacatgctagtagacgag
tttcaagatactaataccattcagtacgcatggttaaagttacttgccggcgacacaagc
agcataatgattgttggcgacgacgaccaaagtatttacggctggcgcggcgctaaaata
gaaaacataaaacgttttttaactgactttgatgctgaaaccattcgccttgaacaaaac
taccgttcaaccgcaactattcttaaagcatctaatgcgcttataaaaaataactccgag
cgtatgggaaaaagcttatggaccgatggtaacgaaggcgagcctatatcaatttatgcc
gcctttaacgagctagacgaagcccgctttgtgagtagcaaattacgtagttggttaaat
gctggtaacgcgttgcaagacgccgctattttataccgtagtaacgcgcaatctcgtgta
ctcgaggaagccatgctgcaagaaggcttaaaatatcgcatttacggtggtatgcgattc
ttcgagcgtcaagaaattaaagatgcgctatcgtacttacgcttagtaggtaatcgccaa
gacgacgccgcatttgagcgtgtaatcaatactcctgctcgcggtattggcgataaaaca
ttaagtcatatacgtgattgtgcacgtgctgagtcacttccgctttggtacgcagctaaa
gctattgttgaacaacagcacttatcgggccgagcagctggcgctgtaacaaagtttgta
gagcttgttgagcacattgaagacaagattagcgatcttactttacaagaacaagctaaa
tacacaattcaaacctctggccttatggctatgtatcaagctgaaaaaggcgaaaaaggc
cgcgcccgtgtagaaaacttagaagaacttataagcgcgtgtgatcaatacgaactccct
gaagaagaagagtttagctcaccactgcaaggctttttagcctatacctcgcttgaatct
ggcgaaggacaagccgacgagcacgaagatgccgtgcagatgatgactctgcattcagct
aaaggcttagaattcccgcttgtatttatggtgggcgtagaagaaggcatgttcccatcg
cagcaaagtaatgaagagtctggccgtttggaagaagaacgtcgtctttgttacgtaggt
atgacccgtgcaatggataaattatacattagccacgccgaaagccgccgcctttatgga
caagagaagtaccacagtccttcacgtttcttacgcgaaatccctgaagactgcgttgaa
gaaattcgtatcaaaacgcaagtttcgcgaccaccggcagcaggtcgctttagtgcatca
gtaagccatgctgcctttgaagacagcggctttaacttaggtcaacgtgtactgcatgct
aagtttggtattggcacggtacttaactatgaaggtagcggtgcacagtcgcgtgtacag
gtaaactttgacgaccttggcagtaaatggttagtaacggcttatgcacgattacaagct
gtataa
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