Pseudoalteromonas marina: CPA52_02705
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Entry
CPA52_02705 CDS
T06578
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pmaa
Pseudoalteromonas marina
Brite
KEGG Orthology (KO) [BR:
pmaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pmaa03009
]
CPA52_02705
Enzymes [BR:
pmaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CPA52_02705
Ribosome biogenesis [BR:
pmaa03009
]
Prokaryotic type
rRNA helicases
CPA52_02705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_RecD
AAA_30
UvrD-helicase
AAA_22
PhoH
SNF2-rel_dom
SAM_3
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ATG57221
LinkDB
All DBs
Position
complement(592773..593999)
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AA seq
408 aa
AA seq
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MQFSEFDLDTKLLDAIDKMGYEKPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAI
QYLLDFPRREPGFARVLIMTPTRELAYQIHEQCELLAKRTHLKIGVVTGGINYGTHKEIF
EKNNDILIATPGRLMEYLETENFHAEHVEMLIVDEADRMLDMGFKKEMSRICDEAKNRRQ
CFLFSATLEGDSVERFAETTLNDPALLEAESSRKEKAKIHQWVHLADDYHHKLELLVNTL
NGPDVTKAIVFVKTRERLETLIGELTNNGVKAAWLRGEMPQDKRMKAMENFHSGRTKILI
ATDVAARGIDVSDISHVINFDMPRTADVYVHRIGRTGRAGKKGIAISLVEAHDIGILYKV
ERYIEQKLKRRVIKGIEPQHKEAKPPVKKRKDPVKMKAKKKAKVKKKK
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcaattttctgaatttgatcttgataccaaattactcgatgccattgataaaatgggc
tacgagaagccaaccagtattcaacaacaagctattcctgaagctcttcaggggcgtgat
attttagcgtctgcgccaactggcacaggtaaaacagcggcatttttaattcctgcgatt
caatacttattggattttccgcgccgtgaacctggttttgcccgcgtattaataatgacg
ccaacacgtgagctggcttatcaaattcatgagcaatgtgagttactagccaaacgtaca
cacctaaaaataggtgtcgtgaccggcggtattaactacggaacgcataaagaaattttt
gaaaaaaataacgacatattaattgctacaccagggcgattaatggaataccttgaaact
gaaaactttcatgctgaacatgtcgaaatgcttatagttgatgaagccgaccgcatgcta
gacatgggtttcaaaaaagaaatgagccgtatttgtgacgaagctaaaaaccgccgtcag
tgttttttattctcagcaacccttgagggtgacagcgtagagcgatttgcagaaaccaca
ttaaacgatccggctttgttagaagctgagtcgtctcgtaaagaaaaagctaaaattcac
cagtgggttcatcttgctgatgattaccaccataaactcgagcttttagtcaacacccta
aatggcccagacgtaactaaagccattgtatttgttaaaacccgtgaacgtttagaaact
ctcattggtgaattaactaataacggtgtaaaagccgcttggctgcgaggtgaaatgcca
caagacaagcgcatgaaagcaatggaaaactttcatagtggccgcactaaaatattaatt
gcaacagatgtagctgctcgcggtattgacgtatctgacattagccacgttattaacttt
gatatgccacgtaccgccgacgtatatgttcaccgtattggccgtactggtcgcgcaggt
aaaaaaggcatcgctatttcattagttgaagcgcatgatattggtattttgtacaaagta
gaacgctacattgaacaaaagcttaaacgccgtgtaattaaaggaatagagcctcagcat
aaagaggctaagccaccggttaaaaagcgcaaagatccggtaaaaatgaaagcaaagaaa
aaagcgaaagttaaaaagaaaaagtaa
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