Pseudoalteromonas marina: CPA52_06095
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Entry
CPA52_06095 CDS
T06578
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pmaa
Pseudoalteromonas marina
Pathway
pmaa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CPA52_06095 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmaa03400
]
CPA52_06095 (recD)
Enzymes [BR:
pmaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CPA52_06095 (recD)
DNA repair and recombination proteins [BR:
pmaa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CPA52_06095 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
RecD_N
Viral_helicase1
SH3_13
Helicase_RecD
UvrD-helicase
AAA_22
SLFN-g3_helicase
NTPase_1
nSTAND3
AAA_16
T2SSE
AAA_28
CbiA
TPP_enzyme_N
Mg_chelatase
UvrD_C
Herpes_Helicase
AAA
TrwB_AAD_bind
AAA_24
SRP54
Motif
Other DBs
NCBI-ProteinID:
ATG57822
LinkDB
All DBs
Position
1321753..1323768
Genome browser
AA seq
671 aa
AA seq
DB search
MSELNQQPGLFDALEDNVEQAPLAHEQQAVSNSVVTEVPLLDYLLGENRIRVVDVKLAQL
LSNTDERTHNELFYIVLLLCIAQQSQHSCLTLNTIDWANPFNLRQSDFNKVEGNIPTTYS
PFVQGFNQQTALTYLQNHQSVGDAKPLQLFDQRLYFSRLAAYEHILAERLLAMSERALNI
DSQTLTALLQHYFPEPPVDDVDWQKVACAIAATKGFSVITGGPGTGKTTTVTKLLAILQS
LYKAAPLSIKLVAPTGKAAARLSESILGAKNQLSSIPDDIKALIPDTAQTIHRLLGVKPF
TNKFRHTQSNPLHLDVLIIDEASMVDLSLMAKLIEALPAHARLILLGDKDQLASVDTGSV
MSDLCQGLALGRTPNYSKQRCDELNALCFDDQPTLISQGNSLFKLADCIAFLQRSYRFDA
KSGIGQLALAVNTNNSGLLNYVEQESVEGRFSDVILDYDFIGKPIENLVNRAAKHYAHYL
NLIAQGESVAKVHAAFAGYQLLAAVKEGDYGVNSLNQRIERTLQQQGLINVNPNQRHYSG
MPIMVSQNDYQLKLFNGDIGILMNDEAGQLKAIFIDEQGSTRAFSPARLPAHDKVFAMTI
HKSQGSEFSYTAMVLPPLQQASVGVNRQLVYTGITRAKHTFELVADKKVLQLAMNKTVSR
SSGLYERLQVK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagttaaatcaacagccgggtttatttgacgcgctagaagacaacgttgaacag
gcgcctttagcgcatgagcaacaggcagtatctaatagcgtggttactgaagtgccgtta
ctggattatttactgggcgaaaatagaatacgcgtcgttgatgtaaaacttgcgcagtta
ctctcaaatacggatgaaagaacacataatgagcttttttatattgtattgttgttatgt
atagcccaacaaagccagcacagttgcttaacattaaacaccatagactgggccaatccg
tttaatttacgccaaagcgactttaataaagttgaagggaatattcccactacgtatagc
ccatttgtgcaagggtttaaccaacaaaccgcgttaacctacttacaaaatcatcaaagc
gttggggatgccaaaccacttcagttatttgaccaacgcctttatttttcgcgtttggca
gcttatgagcacatacttgcagagcggctattagccatgagtgagcgagcgcttaatatt
gatagtcaaactcttactgctttattgcagcattatttcccagagccccccgtggacgac
gttgactggcaaaaagtggcgtgcgccattgcagcaactaaagggtttagtgtaataacc
ggtgggccaggaacaggtaaaacaaccacagtaactaagttgctggctatattgcaatcg
ctttacaaagcagcgccattaagcataaagctggtggcaccgacgggtaaagctgcggca
aggctaagtgagtctattttaggggctaaaaatcagctaagtagtatacccgacgatata
aaagcgctgatccctgatactgcgcaaactattcatcgcttattgggggtaaaacctttt
actaataaatttagacacactcaaagcaatcctctgcacctagatgtgttaattattgat
gaagcaagcatggtggatttatcgctaatggcgaaattaattgaagctttgcctgctcat
gctcgattaatactgcttggtgataaagaccagcttgcctcggttgatacaggcagcgtt
atgagcgatttgtgccaagggcttgcacttgggcgcacaccaaactactcaaagcagcgg
tgtgatgaactaaatgcgctttgttttgatgatcagcctacattaatatcgcagggaaat
agcctatttaaactagccgattgcattgcctttttacaacgcagttaccgctttgacgct
aaaagtggcatagggcaactagcattggcagttaatacaaataatagtggcttattaaat
tatgtagagcaggaaagtgttgaagggcgttttagtgatgttattttggattacgacttt
ataggtaaaccaatagaaaaccttgtaaatcgagcagccaaacattatgcacattattta
aatttaattgcccaaggtgagagtgtagccaaagtgcatgctgcgtttgcaggttatcaa
ttactggccgcagtaaaagagggcgactacggcgttaatagtttgaatcaacgcatcgaa
cggaccctgcagcaacagggtttaataaacgtaaacccaaaccagcgccactatagtggt
atgcctataatggtgagccaaaacgattaccaattaaagctatttaatggcgatattggt
attttaatgaatgatgaagctgggcagcttaaggctatatttattgacgagcagggcagc
acacgtgcattttcaccggctcgtttacccgcacacgacaaagtgtttgcaatgacaata
cataagtctcaagggtcagaatttagctataccgcaatggttttaccgccactacagcag
gcaagtgttggggttaatcgccagcttgtttataccggaattacccgtgctaaacatact
tttgagttagttgccgataaaaaggtactgcagttagcaatgaataaaactgtatcgcgc
tcatctggtttatatgagcggttacaagtgaaataa
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