Pseudoalteromonas marina: CPA52_06200
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Entry
CPA52_06200 CDS
T06578
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmaa
Pseudoalteromonas marina
Pathway
pmaa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CPA52_06200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmaa03400
]
CPA52_06200
Enzymes [BR:
pmaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CPA52_06200
DNA repair and recombination proteins [BR:
pmaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CPA52_06200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ATG57843
LinkDB
All DBs
Position
complement(1344842..1348315)
Genome browser
AA seq
1157 aa
AA seq
DB search
MAFEQWAALPWVKSQKDKIQWGQLSGSGLSIAIAEGVKQQENLVLIVTPDTPSALRLETE
LEYLLPNNPVMVFPDWETLPYDHFSPHQDIISARLATLNTLKKEQQSVLIVPVSTLMLRT
APASFIYGSTINFKVGDKLDTHNFRQNLEQAGYLNVQQVMEHGEYAIRGSIVDLYPMGSP
HPFRLDFFDDELDTIRLFDVETQRSDEKVEKIELLPAHEFPTNESDIERFRIGYREKFGA
SSEQDSVYMQVSKGNWPAGIEYYMPLFFESLATIFDYLPDNTTVMQLGDLEHAADNFWHD
VNVRYENRKVDPLRPLLEPNALYQPIEELFSNLGQFARIRLSLAKLGTKAGNKNLSVCEL
PAIRIDHKQHEPYAAFIDYVTAQKKKKSRILLSVESDGRRESLLNILKPSGLKFKEFDTF
EQFTQSDSDVGLIVSPLEQSVVLGSKPSLSIITEQELLGIKVSQRRRRKHKYEASQDALI
RNLAELKEGQPVVHLDHGVGRYQGLQTIDAAGVITEFVTIIYAGESKLYVPVSALHMLSR
YSGGEESSAPLHKLGSDAWEKAKKRAAEKVRDVAAELLDIYAQRQAKPGNKFTLDGQAYR
QFSESFPFEETDDQRNAIEAVLGDMQSKQAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQ
VAILVPTTLLAQQHYENFKDRFADFPIEVGVLSRFNSTKEQKDTLENMANGKLDIVIGTH
KLIQQDIKFNDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGMR
DLSIIATPPAKRLAVKTFVRQRDVELIREAILREIKRGGQVYFLHNNVETIERVAQELSE
WVPEANVITAHGQMREQELEQIMTQFYHQKYNVIVCTTIIETGIDVPTANTIIMDRADKL
GLAQLHQLRGRVGRSHHQAYAYLLTGDPKALSKDASKRLQAIESLEDLGAGFALATHDLE
IRGAGELLGDDQSGQMQTIGFSLYMEMLEQAVNALREGKEPTLENLLQKQTEVDLKLPAL
LPDDYIHDVNARLGMYKRVASCANLGDIDELQVELIDRFGLLPDAAKNLFSLQQLKMQAS
NLGITKIEANPKGGYFEFSQNTKVNPSFIIGLIQSAPHIYKMEGANKLRFAISEANARER
LKMVTAMIADFEKKVSH
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgagcaatgggcagccttgccttgggtaaaatctcaaaaagataaaattcag
tgggggcagctaagcggaagtggtttaagtattgccattgccgaaggtgttaaacagcaa
gagaacttagtattaattgttacacccgacacccccagcgcgctgcgccttgaaacagag
ctcgaatatttattacctaataatccggtaatggtatttcctgattgggaaaccttgcct
tacgatcatttttctcctcatcaagatattatttctgcgcgtttagctacattaaatacc
ctaaaaaaagaacagcaaagcgtattaattgtgcctgtgtctacgcttatgctgcgaacc
gctccggcctcgtttatttatggttcgacaataaactttaaagtaggcgataaactcgac
acacataattttaggcaaaacttagagcaagccggttacctaaacgtacaacaagttatg
gaacatggtgagtacgcaattcgtggctcaatcgtcgatttataccctatgggtagtccg
cacccatttaggctcgacttttttgatgacgaattagacaccattcgtctatttgatgtg
gaaacgcagcgctctgatgaaaaagtagagaaaattgaactgctgccagcgcatgaattt
ccaacaaatgagtcagatattgagcgtttcaggattggttaccgtgaaaaatttggtgca
agttcagagcaagactctgtttacatgcaagttagtaaaggaaactggccagctggtatt
gaatactacatgccgttattttttgaaagcctagccactatttttgactacctgcctgat
aatacaaccgttatgcagttaggcgatttggaacacgctgcggataatttttggcacgat
gttaatgttcgttacgaaaaccgtaaagtggaccctctgcgcccactacttgaaccaaat
gccttatatcagccaattgaagagctgttttctaacttagggcaatttgcgcgtattcgt
ttatcgcttgccaagctgggcacaaaagcgggtaataaaaatttatccgtatgtgaatta
cctgcaataagaatagatcataaacaacacgagccctatgcggcgttcatagactacgtt
acagcacaaaaaaagaaaaaaagtcgcatattactgagcgttgagtcggatggtcgacgt
gagtctttactcaatattttaaaacccagcggtttaaagtttaaagagtttgataccttt
gaacaatttacccaaagcgatagtgatgtaggcttaattgtaagtccgcttgagcaaagc
gttgtgcttggctctaaaccttcattatcaattattaccgaacaagagctgctaggtatt
aaagtctcgcagcgcagacgccgtaaacataagtacgaagcaagccaagacgctctaatt
cgtaacttagccgagcttaaagaaggtcagcctgttgtgcatcttgaccacggtgttggc
cgctatcaaggtttacaaactattgatgcagcaggtgtaattacagaatttgtgaccata
atatacgccggtgagtctaaattgtatgtgcctgtgtcggcactacatatgcttagccgt
tattcaggcggcgaagaaagcagtgcaccactgcataagctcggctctgatgcgtgggaa
aaggcaaaaaaacgtgctgcagaaaaagttcgtgatgtagccgcagagttacttgatata
tacgcacagcgccaagctaaaccaggcaataaatttactctagacggacaagcctatcgc
cagtttagtgaaagctttccgtttgaagaaaccgacgaccagcgtaatgcaattgaagca
gtattaggcgacatgcaatcaaaacaagcgatggatcgtttagtgtgtggtgatgtaggc
tttggtaaaaccgaggtcgccatgcgtgcagcttttgttgctgttaacgatggtaaacaa
gttgccattttagtgcccactaccctgcttgcgcagcaacactatgagaattttaaagac
cgttttgctgactttcctatcgaagtgggtgtgctttctcgttttaattcaaccaaagag
caaaaagacactctagaaaatatggcgaatggcaagctagacattgttattggtacccat
aaacttattcagcaagacattaaatttaacgatttagggctactcatcgtagatgaagag
catcgttttggggtacgccaaaaagaaaaaattaaagcgctacgtgcagatgtcgatatt
ttaacgcttaccgcaacacctattcctcgaacgctcaatatggcaatgagtggcatgcgc
gacttatctattattgctactccaccggcgaaacgcttggcggttaaaacatttgttcgc
caacgtgatgtagagcttattcgcgaagccattttacgtgaaattaaacgtggtggccaa
gtgtactttttgcacaataacgttgaaacaattgaacgcgtggcgcaagaattaagtgaa
tgggtacctgaagcaaatgtaattaccgctcatgggcaaatgcgcgagcaagagcttgag
caaataatgacccagttttatcaccaaaaatacaatgtaattgtgtgtacaaccattatc
gaaaccggtattgacgtacccacagcaaataccattattatggatagagccgacaaacta
ggcttagcacaattacaccaattgcgtggtcgtgtaggccgaagccaccatcaggcatat
gcctatttgctcacaggcgaccctaaagcattatcaaaagatgccagcaaacgtctacaa
gcaattgaatcattggaagatttaggtgctggttttgcacttgctacacacgatttagaa
attcgtggtgcaggtgaattattgggtgacgatcaatctgggcaaatgcaaactattggc
tttagcttgtatatggagatgcttgagcaagcagtaaacgcactacgtgaaggtaaagaa
cctactcttgaaaacctcttacaaaaacaaaccgaagttgacttaaaactgcctgcatta
ctgcctgatgattatatacatgacgtaaatgcacgattaggtatgtacaagcgtgtagct
agttgtgctaacctaggcgacattgatgagttacaggtagaactaatagaccgatttggt
ttattacctgatgcagctaaaaacttatttagtttgcaacaacttaaaatgcaagccagt
aatttagggataacaaaaatagaggcaaaccctaaaggcggctactttgaatttagccaa
aataccaaggttaatcctagcttcattattgggctgatacaaagtgcaccgcatatttat
aaaatggaaggcgcaaataaattgcgcttcgctattagtgaggcaaatgcccgcgaacgc
ttaaaaatggtcactgctatgattgcagatttcgaaaaaaaggttagccattaa
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