Pseudoalteromonas marina: CPA52_14900
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Entry
CPA52_14900 CDS
T06578
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pmaa
Pseudoalteromonas marina
Pathway
pmaa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmaa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CPA52_14900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmaa03021
]
CPA52_14900
03400 DNA repair and recombination proteins [BR:
pmaa03400
]
CPA52_14900
Enzymes [BR:
pmaa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CPA52_14900
Transcription machinery [BR:
pmaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CPA52_14900
DNA repair and recombination proteins [BR:
pmaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CPA52_14900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
ATG59434
LinkDB
All DBs
Position
complement(3216003..3216989)
Genome browser
AA seq
328 aa
AA seq
DB search
MQGSVTEFLKPRLVDIDAINPTRSKIVLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSAKEGVQEDIIEILLNLKGLAVTLEGKDEVFLTLTKSGVGPVTAADIQHDGD
VTIANPDHVICNLTTGNSEISMRIRVERGRGYVPASSRLSSDDDERPIGRLLLDASFSPV
ERIAYSVESARVEQRTDLDKLIIDMETNGTLDPEEAIRRASTILAEQLDAFVDLRDVTEP
EEKEEKPEFDPILLRPVDDLELTVRSANCLKAEQIQYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASLAE
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgttacagaatttctaaaaccaaggttagtcgacatcgacgctataaac
ccaacgcgttctaaaatagttttagaaccattagagcgtggctttggtcacactctgggt
aatgctttacgccgtatattactttcatctatgcctggatgtgcagtaactgaagtagaa
atcgacggtgtattacatgagtacagcgcgaaagaaggcgttcaagaagacatcattgaa
atactattaaaccttaaaggtttagcagtaacgttagaaggcaaagatgaagtttttctg
accctgactaaatctggtgtaggccctgttactgcggctgatattcagcacgatggcgat
gtaacaattgctaatccagatcacgttatctgtaatttaactacaggtaacagcgagatc
agcatgcgtattcgtgttgagcgcggtcgtggttatgtgccggcatctagtcgtttatcc
tctgatgacgatgagcgtccaattggtagattgttgcttgatgcatcattcagcccagtt
gaacgtattgcgtactcggttgaatcagctcgagttgagcaacgtacagatttagacaaa
ttaatcattgatatggaaacaaacggtacattagatcctgaagaagcgatccgccgtgcg
tctactatcttagctgagcaattagatgcattcgtagatttacgcgatgtaactgagcca
gaagagaaagaagagaaaccagaattcgatcctattctgcttcgtccagtcgatgatctt
gaactaacagtacgctcagcaaattgtttgaaagccgagcaaattcaatatatcggtgat
ttagttcagcgcactgaggttgagcttcttaaaacgcctaatctaggtaagaagtctcta
actgaaattaaagacgtgctagcttcacgtggtctttctctaggtatgcgcctagaaaac
tggccacctgcaagtttagctgaataa
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