Pseudomonas marginalis: U0037_06025
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Entry
U0037_06025 CDS
T10241
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
pmab Pseudomonas marginalis
Brite
KEGG Orthology (KO) [BR:
pmab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pmab03009
]
U0037_06025 (rimO)
Enzymes [BR:
pmab01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
U0037_06025 (rimO)
Ribosome biogenesis [BR:
pmab03009
]
Prokaryotic type
ribosomal protein modification factors
U0037_06025 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
YajR_YAM
CLP1_P
Matrix_Paramyxo_N
DUF730
Motif
Other DBs
NCBI-ProteinID:
WQD73516
LinkDB
All DBs
Position
complement(1328779..1330119)
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AA seq
446 aa
AA seq
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MSTTTAKANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDS
AKAESLEVIGEAIKENGKVIVTGCMGVEEGAIRNVHPSVLAVTGPQQYEQVVNAVHDVVP
PRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDE
AQRLVKSGVKELLVISQDTSAYGVDVKYRTGFWNGAPVKTRMTELCEALSSLGVWVRLHY
VYPYPHVDELIPLMAAGKILPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKNWREICPE
LIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANLLDLAVVPDDVK
QDRWERFMAHQQAISSARLQLRIGKEIEVLIDEVDEQGAVGRCFFDAPEIDGNVFIDDAS
GLKPGDKVWCTVTDADEYDLWAEKRD
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccaccaccgcaaaagccaaccccaaggttggctttgtttccctgggttgcccg
aaggctctggtcgactccgagcgcatcctcacgcaactgcgtatggaaggctatgacgtt
gtgtccacctaccaggacgccgacgtggtggtggtcaacacttgcggcttcatcgactcg
gccaaggcagagtccctggaagtgatcggcgaagccatcaaggaaaacggcaaggtcatc
gtgaccggctgcatgggcgtggaagaaggcgctatccgcaacgtgcacccgagcgtgctg
gcggtgaccggcccgcagcagtacgagcaggtggtcaacgccgtgcacgatgtagtgccg
ccgcgccaggaccacaacccgctgatcgacctggtgccgccgcaaggcatcaagctgacc
ccacgccactatgcgtacctgaagatttccgaaggctgcaaccacagttgcagcttctgc
atcatcccgtcgatgcgcggcaagctggtcagccgtccggtcggtgacgtgctcgatgag
gcccagcgcctggtcaaatccggcgtcaaagagctgttggtgatctcccaggacaccagc
gcctacggcgtcgatgtgaagtatcgcaccggtttctggaacggcgcgccggtgaaaacc
cgcatgaccgaactgtgcgaagccctcagcagcctgggtgtgtgggtgcgcctgcactac
gtttacccgtacccgcacgtggacgaactgattccgctgatggccgccggcaagatcctg
ccgtacttggacatcccgttccagcacgccagcccgaaggtgctcaaggccatgaaacgc
ccggccttcgaagacaaaaccctggcgcgcatcaagaactggcgcgagatctgcccggaa
ctgatcatccgttcgaccttcatcgtcggcttccccggcgaaaccgaagaagacttccag
tacctgctggactggctgaccgaagcccaactggaccgcgtcggctgcttccagtactcg
ccggtcgaaggtgccccggccaacctgctggacctggccgtggtgccggacgacgtcaag
caggaccgctgggagcgcttcatggcgcaccagcaggccatcagctcggcgcgtctgcag
ctgcgtatcggcaaggaaatcgaagtgttgatcgatgaagtcgacgagcaaggcgccgtc
ggccgttgcttcttcgatgcgccggaaatcgacggtaacgtgtttatcgacgacgccagc
ggcctgaagccgggcgacaaggtctggtgcaccgtgaccgacgccgacgaatacgacctg
tgggctgaaaagcgcgactga
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