Pseudomonas marginalis: U0037_22765
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Entry
U0037_22765 CDS
T10241
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pmab Pseudomonas marginalis
Brite
Enzymes [BR:
pmab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
U0037_22765 (hrpA)
Messenger RNA biogenesis [BR:
pmab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
U0037_22765 (hrpA)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WQD70852
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Position
complement(5005406..5009317)
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AA seq
1303 aa
AA seq
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MTDQAPTIDQLLKTLDHAMLADRHRLRRQLLELRKKPDEEKLAQWVARMQASCAQVTARR
ASLPVIRYDDSLPIAAKRDEIKDALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQFGLI
GHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQND
RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAP
IVEVSGRTFPVDTWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDV
LVFLPGEREIRDAADMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICIRLYS
EEDFIGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS
AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDPDSDFAGLVNLWRGFEEQRQELTASPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDMQLTVNKEPADFPKLHKAVLSGLLSQIGQKTEDGDYLGARQRRFWIHPSSG
IGKKRPQWLMTAELVETTKLYARMVAKIDADWIEPLAGHLIKKNHFEPHWEKKRGQVVAF
EQITLFGLIVVGRRPVHYGPIDPVVSRELFIREGLVRGEIQSRAKCLTANQQLLEQLDEL
EAKARRRDILADEETLFAFYDARLPAEIHQTATFDSWYKVNSQKDPQLLIMREEDVLARE
ASEVTAAHYPDTLHLGDLELALSYHFEPNHPRDGVTLRVPAPLLPALPPERLEWLVPGVI
EAKCIALVRNLPKALRKNFVPVPDFVKAALQRIEFGQGSLPQALGRELLRMTGARVSDEA
WAEAAQQVENHLKMNLEVVDGEGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQQPVE
AKVFAAVAEKTQQKIAGLSMTVYPALVEDNGTVKEGRFSTAAEAEFQHRRALQRLLMQQL
AEPAKFLRGKLPGLTELGLMYRELGRIDALVEDILLASLDTCVLEGEASLPRDGAGLAAL
AERKRGSWTEHAERLARLTLEVLKLWHSLQKRFKGKIDLAQAVALNDIKQQLSNLVYPGF
VRETPAQWFKELPRYLKAIELRLEKLPSQVQKDRVWSSELGGLWTQYENRLKKHTQEGKR
DPQLELYRWWLEEYRVSLFGQQLGTKVPISDKRLSKHWSLVEA
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccaagcacccactatcgaccaactgctcaaaaccctcgaccacgccatgctc
gccgaccgccaccgcttgcgccggcagttgcttgagctgcgcaagaaacccgacgaggaa
aagctggcgcagtgggtggcgcgcatgcaggcgtcctgcgcgcaggtcacggcgcggcgc
gccagcctgccggtgatccgctatgacgacagcctgccgattgcggccaagcgcgatgaa
atcaaggacgcgctgctcaagcatcaggtgctgatcattgccggtgaaaccggttcgggt
aaaaccacccagctgccgaagatctgcctggagatcggtcgtggccagttcggtttgatc
ggccacacccagccgcgccggatcgccgcgcgcagtgtcgccagccgcgtcgctgaagaa
ctcgccacgccgcttggcgcgctggtcggctatcaagtccggtttgaagaccaaagtgat
tccaataccctgatcaagctgatgaccgacggcatcctgctggcggaaacccagaacgac
cgttacctcgaacgctacgacacaatcatcgtcgacgaagcccacgaacgcagcctgaac
atcgacttcctgctgggttacctgaagaccctgctgccgcgccgcccggacctgaaggtc
atcatcacctcggcgaccatcgacctggagcgtttttccaagcacttcgacgatgcgccg
attgtcgaggtgtcgggccgcaccttcccggtggacacctggtatcgcccgctgaccctg
gaacaggacgaggagggcaaccgtgtcgaagacgacttgacggtcgatcaggcgatcctc
gcgaccctcgacgaaatcgccgcttatgagcgcagcgagcggcgcagccccggcgatgtg
ctggtgttcctgccgggggagcgcgagattcgcgacgctgccgacatgttgcgcaaggcc
cagctcaagcacaccgaaatcctgccgttgtacgcgcgcctgtcgccggccgaacagcag
cgcatcttccagtctcatccgggccggcgcgtggtgctggcgaccaacgtcgcggaaacc
tcgctgaccgtgccgggcattcgttatgtgatcgacagcggtaccgcacgcatcagccgc
tacagttaccgcgccaaggtgcagcgcctgccgatcgaagcgatttcccaggccagcgcc
aaccagcgtaaaggccgttgcggtcgggtcgagcccggcatctgcattcgcttgtacagc
gaagaagactttatcggccgtccggaatttaccgaccctgagatcctgcgcaccaacctc
gccgccgtgatcctgcagatgctgcacctgcgcctcggcgaaatcaccgatttcccgttt
atcgaaccgccggacggcaaggccatcagtgacggtttcaacctgctgcaagagctttcg
gcagtggaccgtaacagccagctcaccccgttgggccgtcagctggcgcgcctgccggtc
gacccgcgcatgggccgcatgttgctcgaagccgccaagctcggcagtttgcaggaagtg
ctgatcgtcgccagcgccatgtcgatccaggacccgcgcgagcggccgccggagcgtcaa
caggccgccgaccaggcccacgcacagtggaaagacccggattcggacttcgccgggctg
gtcaatctgtggcgcggctttgaagagcaacgccaggaactgaccgccagcccgttgcgt
aactggtgtcgcaagaatttcctcaactacctgcgcctgcgcgagtggcgcgactcccat
cgccagttgagcctgatttgccgcgacatgcagctgaccgtcaacaaagagccggccgac
ttcccgaaactgcacaaggcggtgctgtccggcctgctcagccagatcggccagaagacc
gaagacggcgattacctcggcgcacgtcagcggcgtttctggattcacccgtcctcgggc
atcggcaaaaagcgcccgcaatggttgatgactgccgaactggtggaaaccaccaagctg
tatgcgcgcatggtcgccaagatcgacgcggactggatcgagccgctggccgggcacctg
atcaagaaaaaccacttcgaaccgcactgggagaagaagcgcggccaagtcgtggccttt
gagcagatcaccctgttcggcctgattgtggtcgggcgccggccggtgcattacgggccg
attgacccggtggtgtcccgcgagctgtttatccgtgaaggcctggtgcgtggcgagatc
cagtcgcgagccaaatgcctcacggccaaccagcagttgctggaacagctcgacgaactc
gaagccaaggcgcgtcgtcgcgacatcctggcggatgaagaaaccctgttcgccttctac
gatgcgcgcttgccggcggagattcaccagaccgcgaccttcgacagttggtacaaggtc
aacagccagaaagacccgcaactgctgatcatgcgcgaggaagatgtgctggcccgcgaa
gccagtgaagtcaccgccgcgcattacccggacaccctgcacctgggcgacctggaactg
gccttgagttaccacttcgaacccaaccacccgcgtgacggcgtgaccctgcgcgtgccg
gctccgttgctgccggccctgccgccggagcgcctggagtggctggtgccgggggtgatc
gaagccaaatgcatcgccctggtgcgcaacctgcccaaggcgctgcgcaagaatttcgtg
ccggtgccggacttcgtcaaggccgccctgcaacggatcgagttcggccagggctcgttg
ccccaggcgctgggccgtgaattgctgcgcatgacgggcgcgcgggtcagtgatgaagcc
tgggccgaagccgcgcagcaggtcgaaaaccacctgaagatgaacctggaagtggtcgac
ggcgagggcaagttcctcggcgaaggccgcgacctggctgaactgacggcgcgcttcgcc
gaggccagccaggccgcgttggccgtgccgcaaaccgcgaaaagccagcagccggtcgag
gccaaagtgtttgcggcggtggcggaaaagactcagcagaagatcgccgggctgtcgatg
acggtgtacccagcactggtggaagacaacggcacggtcaaggaagggcgcttctccacc
gccgccgaggctgaattccagcatcgccgcgccttacaacgcttgctgatgcagcaactg
gcggaaccggcgaagttcctgcgtggcaaattgccgggtctgaccgaattggggctgatg
taccgcgaactggggcgcatcgatgcgctggtggaagacatcctattggccagcctcgac
acctgcgtactcgaaggcgaagccagcctgccgcgtgatggcgccggtttggcggccttg
gccgagcgtaagcgcggcagctggaccgaacacgccgagcgtttggcgcgcctgaccctg
gaggtgctgaaactctggcacagcctgcaaaaacgcttcaaaggcaagatcgacctggcc
caggccgtggccctgaacgatatcaagcagcaactgagcaacctggtgtatcccggtttt
gtgcgggaaaccccggcgcagtggttcaaggagttgccgcgttacctcaaggccatcgag
ttacgcctggagaaactgccgagccaggtgcaaaaagaccgggtatggagcagcgagctg
ggcgggctgtggacgcagtacgaaaaccgcctgaaaaagcacacccaggaaggcaagcgc
gatccccagctggagctttaccgctggtggttggaagaatatcgggtctcgttgtttggc
cagcagttgggcaccaaggtgccgatttccgacaagcgtctgagcaaacactggagtctg
gtcgaagcctga
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