Pseudomonas marginalis: U0037_23605
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Entry
U0037_23605 CDS
T10241
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pmab Pseudomonas marginalis
Pathway
pmab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U0037_23605 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmab03019
]
U0037_23605 (rne)
03009 Ribosome biogenesis [BR:
pmab03009
]
U0037_23605 (rne)
Enzymes [BR:
pmab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
U0037_23605 (rne)
Messenger RNA biogenesis [BR:
pmab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
U0037_23605 (rne)
Ribosome biogenesis [BR:
pmab03009
]
Prokaryotic type
rRNA processing factors
U0037_23605 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
WQD71013
LinkDB
All DBs
Position
5188567..5191746
Genome browser
AA seq
1059 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAHSGQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPT
EVAAPVAAPAALPEPSLFKGLVKSLVSLFATKEEPVAPVVVEKPATERPARNEERRNGRQ
QSRNRNGRRDEERKPREERAPREERAPREERAPREAREETPTVAREERAPREERAPRTPR
APREDRKPRGEREERVRELREPLDAAPAVAAEAVSEERPARQPREERAPREERQPRAPRE
ERQPRAEQAAAASEEEVLTGEEQPQEDGQEGAEGDRPRRRSRGQRRRSNRRERQRDANGN
VIEGSEETGENAEAATSEPTGAELAAGLAVTAAVASSVISAPAEAQAHEQAERATAAVEE
TVIAETPVAETPIVEAPAVEASVAEAPVVEAPAVEATTPIEAPVVPEVEVVPEVEVAPVQ
EAQPEVEVAAVEEAPAIEPQPVTETVVEAPVVEAAPEVREVREEQTAFQWTAEPAAPVEA
PEPAPVVEDAPAPVAEVVVAEPAPVVEPAPVVEPAPVVEAPVVAEVAAPVVEAAPVSALT
ENGRAPNDPREVRRRRKEAEAAAAAAAAQEAEHESKPLV
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagat
ggccaacgcctctacgacctggacatcgaatccggtgcacgcgagcagaagaaggccaat
atctataaaggccgtattactcgcatcgaaccaagccttgaggctgcctttgtcgatttc
ggctccgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcgcctgaaggccgcgtgaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtt
caggtcgaaaaagaagaacgtggcaacaagggcgccgccctgaccaccttcatcagcctg
gcaggccgttacctggtcctgatgccgaacaacccacgtgccggcggtatttcccgtcgc
atcgaaggcgaagagcgcaacgaactgcgtgaagcgctgaacggcctgatcgcaccggcc
gacatgggcctgatcgttcgcactgccggcctgggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcaactatggaccgccatcaaagaagcgtccctggatcgttcc
gcgccattcctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgattacctg
cgccaggacatcggcgaagtgctgatcgacagcgttgaagcacaggacgaagccctgacc
ttcatccgccaggtcatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtc
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgccttccagcgcgtggtc
gaactgccttccggtggctccattgtgatcgacccgaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccactaaaggtagcgacatcgaagaaaccgccctgcagaccaac
ctggaagcggctgaagaaatcgcccgccagctgcgcctgcgcgacatcggcggcctgatc
gtgatcgacttcatcgacatgacccccgccaagaaccagcgcgccgtggaagagaaagtc
cgcgaatgcctggaagctgaccgtgcccgcgtacaggttggccgcatctcgcgcttcggc
ctgctggaaatgtcccgtcaacgcctgcgtccgtccctgggcgaaagcagcggcatcgtc
tgcccgcgttgcaatggcaccggcatcatccgtgacgtcgagtcgctgtccctggcgatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcaccgccgaagtccgcgcacaagtg
ccgatcccggtcgccgcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgtgcccgtatcgtgatcctgccgaacgatcacctcgagacgccgcacttc
gaagtgcagcgcctgcgtgatgacagcccggaagcccacagcggccagtccagctatgaa
atcgccgctgccgccgccgaagtggaagaagtccagccggccgctgcgacccgcaccctg
gttcgccaggaagccgccgtgaagaccgcccctgcccgcgccaacgcaccggtgccgact
gaagtggctgcaccggttgccgcaccggccgccctgcctgagccaagcctgttcaagggc
ctggtgaagtcgctggtcagcctgttcgcgaccaaggaagagcccgttgctccggttgtg
gttgaaaaacctgccaccgaacgcccggcgcgcaacgaagagcgtcgcaacggtcgccag
cagagccgtaaccgtaacggtcgccgtgacgaagaacgcaagcctcgcgaagaacgtgca
ccgcgtgaagaacgcgcgccacgtgaagagcgtgcgcctcgcgaagcccgtgaagaaacc
ccgaccgtagcccgtgaagaacgcgcaccgcgtgaagagcgtgcaccacgcaccccacgt
gctccgcgtgaagatcgcaagccacgtggcgagcgtgaagaacgtgtgcgtgaactgcgc
gagccgctggatgccgctccggccgtcgccgccgaagccgtcagcgaagaacgcccggct
cgccagccgcgtgaagaacgcgcgccacgtgaagaacgccaacctcgcgctccgcgtgaa
gagcgtcaaccacgtgccgagcaagcggctgccgccagcgaagaagaagtactgaccggc
gaagagcaaccgcaggaagacggtcaggaaggcgccgaaggcgatcgtccacgccgccgc
tcccgtggccagcgtcgtcgcagcaaccgtcgtgagcgtcagcgtgatgccaacggcaac
gtgatcgaaggctcggaagagaccggcgaaaacgcagaagccgctaccagcgaaccgacg
ggcgccgaactggctgccggcctggctgttaccgctgccgttgccagctcggtcatcagc
gcacctgctgaagcccaggcccacgagcaggctgagcgcgctactgctgctgtcgaagag
accgtcatcgcagaaacacctgttgccgagacgccaatcgttgaagcacctgctgttgaa
gcatcggttgctgaagcgccagttgtagaagcgccggctgtcgaagccaccaccccaatc
gaagcgccggttgtgccggaagtggaagttgttccggaagtagaagttgctccggttcaa
gaagcccagccagaagttgaagtggcagcggttgaagaagcaccggcgattgaacctcag
ccagtgactgaaacagtcgttgaagctccggttgtcgaggcggctccagaagttcgtgaa
gttcgtgaagaacagaccgccttccaatggactgccgagcctgccgcgccggttgaagcg
ccagaacctgccccagtggtagaagacgcgccggcaccggttgccgaagtcgtggttgcc
gagccagcccccgtggttgagcctgctccggtcgttgaacctgcacccgtggttgaagcg
ccggtggttgccgaagttgccgcgccagtggttgaagcagcaccggtcagtgccctgacc
gaaaacggccgtgccccgaacgacccacgtgaagtgcgtcgtcgtcgcaaggaagctgaa
gccgctgcagcggctgccgcagcacaggaagcagagcacgagagcaaacctctcgtctga
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