Pseudomonas marginalis: U0037_24190
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Entry
U0037_24190 CDS
T10241
Symbol
fadD1
Name
(GenBank) long-chain-fatty-acid--CoA ligase FadD1
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
pmab Pseudomonas marginalis
Pathway
pmab00061
Fatty acid biosynthesis
pmab00071
Fatty acid degradation
pmab01100
Metabolic pathways
pmab01212
Fatty acid metabolism
pmab02024
Quorum sensing
pmab04146
Peroxisome
Module
pmab_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
pmab00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
U0037_24190 (fadD1)
00071 Fatty acid degradation
U0037_24190 (fadD1)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
U0037_24190 (fadD1)
09145 Cellular community - prokaryotes
02024 Quorum sensing
U0037_24190 (fadD1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pmab01004
]
U0037_24190 (fadD1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmab04147
]
U0037_24190 (fadD1)
Enzymes [BR:
pmab01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
U0037_24190 (fadD1)
Lipid biosynthesis proteins [BR:
pmab01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
U0037_24190 (fadD1)
Exosome [BR:
pmab04147
]
Exosomal proteins
Exosomal proteins of breast milk
U0037_24190 (fadD1)
Exosomal proteins of breast cancer cells
U0037_24190 (fadD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_2
DUF599
Motif
Other DBs
NCBI-ProteinID:
WQD71121
LinkDB
All DBs
Position
complement(5306805..5308496)
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AA seq
563 aa
AA seq
DB search
MNEDFWKDKYPAGIAAQINPDEYPNIQAVLKQSCQRFANKPAFSNLGKTITYGELYELSG
AFAAYLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAIRAGLIVVNTNPLYTAREMEHQFND
SGAKALVCLANMAHLAEKVVPKTAIKHVIVTEVADLLPPLKRLLINSVIKYVKKMVPAFH
LPKAIKFNDVLAKGHGQPVSNANPASGDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCK
ALMGSNLNEGCEILITPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELSKWK
FSGFVGLNTLFVALCNNEAFRKLDFSALKVTLSGGMALQLAAAERWKAVTGCGICEGYGM
TETSPVATVNPIQHIQIGTIGIPVPSTVCKVIADDGTELALGETGELCVKGPQVMKGYWQ
RQEATDEMLDSEGWLKTGDIAIIQPDGYMRIVDRKKDMILVSGFNVYPNELEDVLAGLPG
VLQCAAIGVPDEKSGEHIKLFIVVKPGATLTKEQVMEHMRANVTAYKVPRAVEFRDALPT
TNVGKILRRELRDEELKKLGLKK
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagacttttggaaggataagtaccccgccgggattgctgcacaaatcaatcca
gacgagtatccaaatattcaggcggtactgaagcagtcctgccagcgcttcgccaacaaa
ccggctttcagcaacctgggcaagacaatcacctacggtgaattgtatgaattgtccggc
gccttcgccgcgtacctgcagcaacataccgacttgaagcccggcgaccgcatcgccgtg
cagttgcccaacgtcctccagtacccggttgccgtcttcggtgccatccgcgccggcctg
atcgtggtcaacaccaacccgctgtacaccgcgcgggaaatggaacaccaattcaacgac
tccggggccaaggccttggtctgcctggccaacatggctcacctggcggaaaaggtcgtg
cccaagaccgccatcaagcacgtgatcgtcactgaagtcgctgacctgttgccgccgctc
aagcgcctgctgatcaacagcgtcatcaagtacgtgaagaaaatggtcccggcgtttcac
ttgcccaaggcgatcaagttcaacgacgtgttggccaaggggcatggccaaccggtcagc
aacgccaacccggccagcggcgatgtagccgtgctgcaatacactggcggcaccaccggc
gtggcgaagggcgcgatgctcactcaccgcaacctggtcgcgaacatgctgcaatgcaag
gcgctgatgggttccaacctcaacgaaggttgcgagatcctgatcacgccgctgccgctg
taccacatctatgcgttcacctttcattgcatggcgatgatgctgatcggcaaccacaac
atcctgatcagcaacccgcgcgacctgccggcgatggtcaaggagctgtcgaagtggaag
ttcagcggctttgtcggcttgaacaccctgttcgtcgcgctgtgcaacaacgaagccttc
cgcaagctggacttctccgcgctgaaagtcaccctgtcgggcggcatggcgttgcaactg
gcagccgctgaacgctggaaggccgtgaccggctgtggcatctgcgaaggctacggcatg
accgaaaccagccccgtggctaccgtgaacccgatccagcacatccagatcggcaccatc
ggcattcccgtgccgtccaccgtgtgtaaagtcatcgccgacgacggcaccgaactcgca
ctgggtgaaaccggcgagctctgcgtcaagggtccgcaagtgatgaagggctactggcag
cgccaggaagccaccgacgagatgctcgacagcgaaggctggctgaagaccggtgacatc
gcgatcatccagcccgacggctatatgcgcattgtcgaccgcaagaaagacatgatcctg
gtctcgggcttcaacgtgtaccccaacgagctggaagacgtgttggcgggcttgccgggc
gtgctgcagtgcgcggccatcggcgtgccggacgagaagtccggggaacacatcaagctg
tttatcgtggtcaagccaggcgcaaccctgaccaaggagcaggtgatggagcacatgcgc
gccaacgtcaccgcctacaaagtgcccagggccgtggagttccgcgatgcgttgccgacc
accaacgtaggcaagatcctgcggcgtgagttgcgcgatgaagagttgaagaagctcggt
ctgaaaaagtaa
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