Pseudomonas marginalis: U0037_25030
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Entry
U0037_25030 CDS
T10241
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pmab Pseudomonas marginalis
Pathway
pmab03410
Base excision repair
pmab03430
Mismatch repair
pmab03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
U0037_25030 (recJ)
03430 Mismatch repair
U0037_25030 (recJ)
03440 Homologous recombination
U0037_25030 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmab03400
]
U0037_25030 (recJ)
DNA repair and recombination proteins [BR:
pmab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
U0037_25030 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
U0037_25030 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
U0037_25030 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
WQD71277
LinkDB
All DBs
Position
complement(5493303..5495012)
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AA seq
569 aa
AA seq
DB search
MRIDPRPLPAVLPFLGDLPPLLTRLYAARGVQSEAELDKSLARLIPYQRLKGIDAAVDLL
VTALEQRQRILIVGDFDADGATASTVGTLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAV
ALQREPQLLITVDNGISSVEGVAAAKAAGLKVLVTDHHLPGDELPAADAIVNPNQPGCEF
PSKALAGVGVIFYVLMALRARLRSLGWYEHKPQPNIGELLDLVALGSVADVVPLDANNRI
LVHQGLERIRAGRARPGIKAILEVAKRDAARITSTDLGFILGPRLNAAGRLDDMSLGIEC
LLTTDVAAAREMAAQLDGMNQDRKSIEQGMQREALAQLKDLPVESMPYGLCLFDPEWHQG
VIGILASRMKERYFRPTIAFADAGDGLLKGSGRSVPGFHIRDALAVVASQHPHLIAKYGG
HAMAAGLTLPEENFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHA
GPWGQHFPEPLFHGVFQLVEQRVVGERHLKVVLKSECGSVKLDGIAFGVDREVWPNPTVR
WVELAYKLDVNEFRGNETVQLMIAHIEPR
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatcgatcctcgcccgttgcctgccgtcctgccgtttctcggtgacttgccaccg
ctgttgacccgtctctacgccgcgcgcggggtgcagtccgaagccgagctggacaaaagc
ctggcgcggttgattccctatcagcggctcaagggcatcgacgcagcggtggacttgctg
gtgaccgcgttggaacagcgccagcgtatcctcatcgtcggcgacttcgacgccgacggc
gccactgccagcaccgtaggcaccttgggcctgcgcttgctcggcgccgcccatgtcgat
tacctggtgcccaaccgcttcgagtatggctacggcctgaccccggaaatcgtcgcagtc
gcgctgcagcgcgagccgcagttgctgatcactgtggacaacggtatctccagcgtcgaa
ggcgtggcggcggcgaaagcggccgggctgaaggtgctggtgactgaccaccatttgcct
ggcgatgaattgccggcggcggatgccattgtcaacccgaaccagccgggctgtgagttc
ccgagcaaggcgctggccggtgtgggcgtgatcttctacgtgctgatggccctgcgggcg
cgcctgcgcagcttgggctggtacgagcataagcctcaacccaacatcggcgaactgctc
gacctggtggccctgggcagtgtggccgacgtagtgcccttggacgccaacaaccgcatc
ctggtgcatcagggcctggagcgcatccgcgccggtcgcgcacggccggggatcaaggcg
atccttgaagtggccaagcgcgacgcggcacgtatcacctccaccgacctgggctttatc
ctcgggccgcgactgaatgccgccgggcgcctggatgacatgagcctgggcatcgaatgc
ctgctcaccaccgacgttgccgccgcgcgtgaaatggccgcgcaactggacggcatgaac
caggaccgtaaatccatcgagcaaggcatgcagcgcgaggccctggcccagctcaaggac
ttgccggtggagtcgatgccctacgggctgtgcctgttcgacccggaatggcaccaaggc
gtgatcggcattctcgcctcgcgcatgaaagagcgctatttccgcccgaccatcgccttc
gctgatgccggagatggcctgctcaagggctcagggcgctctgtgccggggtttcatatc
cgcgatgcgctggcggtggtcgccagccagcatccccacctgatcgccaaatacggcggc
catgccatggccgccggtttgacgctgcccgaagaaaacttcccgctgtttgccgaggcc
tttgatgccgaagtgcgtcggcagctgcgcgaagaagacctgaccgggcgcctgctgtcc
gacggtactctggcagtggaagagtttcacctggaactggcccgcgcattgcggcacgcg
ggcccttgggggcaacactttcccgagccgttgtttcacggggtgtttcagttggtggaa
cagcgcgtggtgggcgagcggcacctgaaagtggtgctcaagagcgaatgcgggtcggtg
aagctcgacggcattgcgtttggggtggaccgtgaggtctggccgaacccgacggtgcgt
tgggtggagctggcctataagctggatgtgaacgagtttcgcgggaatgaaaccgtgcaa
ctgatgatcgcgcacatcgagccacgctag
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