Pseudomonas marginalis: U0037_27050
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Entry
U0037_27050 CDS
T10241
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pmab Pseudomonas marginalis
Brite
KEGG Orthology (KO) [BR:
pmab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmab03019
]
U0037_27050 (hrpB)
Enzymes [BR:
pmab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
U0037_27050 (hrpB)
Messenger RNA biogenesis [BR:
pmab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
U0037_27050 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
ResIII
HA2_N
AAA_22
Flavi_DEAD
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WQD71660
LinkDB
All DBs
Position
complement(5918740..5921250)
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AA seq
836 aa
AA seq
DB search
MNSLPIDDVLPALRDALAIRHEAVLEAPPGAGKTTRVPLALLNEPWLTGQTILMLEPRRL
AARAAAERLASELGEKVGETVGYRIRLDSKVGPNTRIEVVTEGILTRRLQDDPALDGVGL
LIFDEFHERSLDADLALALSLNGRELFRDEQPLKILLMSATLEGERLASLLDDAPILRSE
GRMFPVQMRWGRPYQPGEFIEPRVVQTILEALHDETGSVLVFLPGQAEIRRVSQQLADAL
GDRTDVLLCPLHGELDLNAQRAAIDPAPAGKRKVVLATNIAETSLTINGVRVVIDAGLAR
VPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEDQHEGLAAYGSAEILA
ADLAGLALQLARWGVTPAQLVWLDVPPTAAYAQAQDLLQRLGALNDDTLTAHGQKMAELP
AHPRIAHLLLRGQDLGLAATACDVAALLGERDILRGGGADLHSRLALLSGEERARGSQGG
VQRAKQLARQYRGYLRGQAAQPVADPDHPRWLGALLALAYPDRVAQQRRPGGAEYRLANG
RAAVFAEADSLMKQPWLVIADLGSRQGQREERIYLAADFDPMLFDTVLAEQVCNVDQLDW
DEREGVLRAERQRKVGELVLSREPLTGLDESARSQALVNLVRRKGLELLPWTPELRQWQA
RVMLLRQLDAGKTSEWPDISDKALLASLEHWLMPYLGKVSRLSHFASLDISSFLHNLLPW
PLPQRLDELAPQHVKVPSGSSVRLDYSEQPPILAVRLQELFGLADTPRIAGGRQVVKLHL
LSPARRPVQVTQDLANFWRSTYAEVKKDLKGRYPKHYWPDDPLVAEATARIKPRKS
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgaattcgttgccgattgatgatgttttacccgccctgcgtgacgccttggcgattcgc
catgaggccgtgctggaagcgccgcccggcgccggtaaaaccacccgtgtgccgttggcg
ttgttgaatgagccatggctgaccgggcagaccatcctgatgctcgaaccccgtcgtctc
gccgcccgtgcggcggccgaacgcttggccagcgagttgggcgagaaggtcggtgaaacc
gtcggctatcgcatccgcctggacagcaaagtcggccccaacacccgcatcgaagtggtc
accgaaggcatcctcacccgccgcctgcaggacgacccggcgctggacggcgtgggcctg
ctgatcttcgatgagttccatgaacgcagccttgatgccgacctggcgctggccctgagc
ctgaatggccgcgagctgtttcgcgatgagcaaccgctgaaaatcctgctgatgtccgcc
accctcgaaggcgaacgcctggccagcctgctggatgacgcgccgatcctgcgcagcgaa
gggcgtatgttcccggtgcagatgcgctgggggcggccgtaccagccgggtgaattcatc
gagccgcgtgtggtgcaaacgatcctcgaagccctgcatgacgaaaccggcagcgtgctg
gtgttcttgccggggcaggcggagattcgccgggtcagccagcagttggccgatgccttg
ggcgatcgcaccgatgtgctgctgtgcccgttgcatggcgagctcgacctcaacgcccag
cgcgcggccatcgacccggcgcccgcgggcaaacgcaaagtcgtgctggcgaccaacatc
gccgagaccagcctgaccatcaacggcgtgcgcgtggtgatcgatgccgggttggcgcgg
gtgccgcgtttcgaccccggcagcggcatgacccgcctcgacacccaacgtatctcccgc
gccagtgccacccagcgcgccggccgggcagggcgtctggaacctggggtgtgttatcgc
ttgtggtccgaggaccagcatgaagggttggctgcgtacggcagtgcggaaattctggcg
gccgacctggccggcctggcgctgcagttggcgcgctggggcgtcacgcctgcgcagttg
gtatggctggatgtgccgccgaccgctgcgtatgcccaggctcaggatttgttgcagcgc
ctcggcgccttgaatgacgacacgctcaccgcccatgggcagaagatggccgagctgccg
gcccatccgcgtatcgcccatttgttgctgcgcgggcaagatctcgggttggcggcgacg
gcatgcgacgtggccgccttgctgggagagcgcgatatcttgcgcggcggcggtgcggat
ttgcacagtcggctggcgcttctgtccggcgaggagcgcgcacgcggcagccaaggcggc
gtgcagcgggccaagcaactggcgcgacaatatcgtggctacttaagaggccaggcggct
caacccgttgccgaccccgatcacccgcgctggctcggtgccttgctggccctggcctac
ccggaccgtgtcgcccagcaacggcgccccggtggtgccgaataccgcctggccaatggc
cgcgctgcagtgttcgccgaggctgacagcctcatgaagcaaccctggctggtcatcgcc
gatctgggcagtcgccagggccagcgtgaagaacgcatctacctggcggcggattttgac
ccgatgctgttcgacacagtgctcgccgaacaagtgtgcaacgtcgaccagttggactgg
gatgaacgcgaaggcgtgctgcgcgccgaacgccaacgcaaagtcggcgaattggtgctc
agccgtgagccgttgaccggtctcgacgaatccgcacgcagccaggcgctggtcaacctg
gtgcgccgcaaaggcctggaactgctgccgtggacgccggagctgcgccagtggcaggcc
cgcgtcatgctgctgcgccagctggacgccggtaaaaccagcgaatggcccgacatcagc
gacaaggcgttgctcgccagcctcgagcactggctgatgccctacctgggcaaagtctcg
cggctgagccacttcgccagtctggatatctccagcttcctgcacaacctgctgccctgg
ccgttgccccagcgcctggacgaactggcgccgcagcacgtgaaagtgccgtcgggttcg
tcggtgcggctggactacagcgagcagccgccgattctggcggtgcgtttgcaggaattg
ttcgggctggcggatacaccccgcattgccggcggacgccaggtggtgaagctgcacctg
ctgtccccggcgcgtcggccggtgcaggtgacgcaggacctggcgaacttctggcgcagt
acctatgccgaggtgaagaaggatttgaaggggcggtacccgaagcactattggccggat
gatccgttggtggccgaagcgaccgcgcggataaaacctcgcaagtcgtaa
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